Evidence map›Paper›PMID 24606136›Full record

ReviewAnnual review of biochemistry2014

Understanding nucleic acid-ion interactions.

Jan Lipfert, Sebastian Doniach, Rhiju Das, Daniel Herschlag

Abstract readReview
In one paragraph

Review in Annual review of biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 241 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
241citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

241 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Chromatin Packing Domain Engineering Through the Manipulation of Nuclear Cationic States.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Perturbation of RNA homeostasis impairs mitochondrial respiration during poxvirus infection through excess RNA accumulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. The master molecule that built biology: How water shaped the chemistry of life.Protein science : a publication of the Protein Society · 2026
    Review
  8. Article
  9. Quantifying MgbioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Ion Adsorption at Surfaces from Local and Global Electroneutrality Constraints.Langmuir : the ACS journal of surfaces and colloids · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Emergent Chemical Reactivity and Complexity of RNA Condensates.Angewandte Chemie (International ed. in English) · 2025
    Article
  20. Ion NMR for Biomolecular Systems.Journal of molecular biology · 2025
    Review

181 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jan LipfertDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2628 CJ Delft, Netherlands; email: Jan.Lipfert@lmu.de.
Sebastian Doniach
Rhiju Das
Daniel Herschlag

Funding

Time-resolved small angle X-ray scatteringP01GM066275 · NIGMS · STANFORD UNIVERSITY · PI HERSCHLAG, DANIEL · 2003 to 2017
$17.8M
Tracking conformational states in enzyme catalysts using correlated X-ray scatterR01GM097463 · NIGMS · STANFORD UNIVERSITY · PI DONIACH, SEBASTIAN · 2012 to 2015
$1.7M
NIGMS NIH HHS P01 GM066275NIGMS NIH HHS R01 GM097463
6 · The paper itself

Abstract

Ions surround nucleic acids in what is referred to as an ion atmosphere. As a result, the folding and dynamics of RNA and DNA and their complexes with proteins and with each other cannot be understood without a reasonably sophisticated appreciation of these ions' electrostatic interactions. However, the underlying behavior of the ion atmosphere follows physical rules that are distinct from the rules of site binding that biochemists are most familiar and comfortable with. The main goal of this review is to familiarize nucleic acid experimentalists with the physical concepts that underlie nucleic acid-ion interactions. Throughout, we provide practical strategies for interpreting and analyzing nucleic acid experiments that avoid pitfalls from oversimplified or incorrect models. We briefly review the status of theories that predict or simulate nucleic acid-ion interactions and experiments that test these theories. Finally, we describe opportunities for going beyond phenomenological fits to a next-generation, truly predictive understanding of nucleic acid-ion interactions.

Indexed as

AlgorithmsBinding SitesCationsCrystallography, X-RayDNAIonsMagnesiumMetalsModels, TheoreticalNucleic Acid ConformationNucleic AcidsPoisson DistributionRNASoftwareStatic ElectricityThermodynamicsCationsDNAIonsMagnesiumMetalsNucleic AcidsRNAelectrostaticsfree energyHill equationionsManning condensationPoisson–BoltzmannRNA/DNA

Identifiers

PMID24606136
PMCPMC4384882

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.