Evidence map›Paper›PMID 24605246›Full record

ArticleGenes2013

Adenosine Triphosphate (ATP) Is a Candidate Signaling Molecule in the Mitochondria-to-Nucleus Retrograde Response Pathway.

Feng Zhang, Tammy Pracheil, Janet Thornton, Zhengchang Liu

Open access · goldAbstract read
In one paragraph

Article in Genes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. ATP homeostasis and signaling in plants.Plant communications · 2024
    Review
  3. Review
  4. Article
  5. Mitochondrial Factors in the Cell Nucleus.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Conceptual Evolution of Cell Signaling.International journal of molecular sciences · 2019
    Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Feng ZhangDepartment of Molecular Biology, UT Southwestern Medical Center, Dallas, TX, USA.
Tammy PracheilDepartment of Biological Sciences, University of New Orleans, 2000 Lakeshore Drive, New Orleans, LA 70148, USA.
Janet ThorntonDepartment of Molecular Biology, UT Southwestern Medical Center, Dallas, TX, USA.
Zhengchang LiuDepartment of Biological Sciences, University of New Orleans, 2000 Lakeshore Drive, New Orleans, LA 70148, USA.
The University of Texas Southwestern Medical Center · USUniversity of New Orleans · US

Funding

REGULATION OF MITOCHONDRIAL BIOGENESIS IN YEASTR37GM022525 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI BUTOW, RONALD A · 1998 to 2007
$3.1M
Amino Acid Sensing and Signaling in YeastR15GM094772 · NIGMS · UNIVERSITY OF NEW ORLEANS · PI LIU, ZHENGCHANG · 2011 to 2011
$284k
NIGMS NIH HHS R15 GM094772NIGMS NIH HHS R37 GM022525
6 · The paper itself

Abstract

Intracellular communication from the mitochondria to the nucleus is achieved via the retrograde response. In budding yeast, the retrograde response, also known as the RTG pathway, is regulated positively by Rtg1, Rtg2, Rtg3 and Grr1 and negatively by Mks1, Lst8 and two 14-3-3 proteins, Bmh1/2. Activation of retrograde signaling leads to activation of Rtg1/3, two basic helix-loop-helix leucine zipper transcription factors. Rtg1/3 activation requires Rtg2, a cytoplasmic protein with an N-terminal adenosine triphosphate (ATP) binding domain belonging to the actin/Hsp70/sugar kinase superfamily. The critical regulatory step of the retrograde response is the interaction between Rtg2 and Mks1. Rtg2 binds to and inactivates Mks1, allowing for activation of Rtg1/3 and the RTG pathway. When the pathway is inactive, Mks1 has dissociated from Rtg2 and bound to Bmh1/2, preventing activation of Rtg1/3. What signals association or disassociation of Mks1 and Rtg2 is unknown. Here, we show that ATP at physiological concentrations dissociates Mks1 from Rtg2 in a highly cooperative fashion. We report that ATP-mediated dissociation of Mks1 from Rtg2 is conserved in two other fungal species, K. lactis and K. waltii. Activation of Rtg1/3 upregulates expression of genes encoding enzymes catalyzing the first three reactions of the Krebs cycle, which is coupled to ATP synthesis through oxidative phosphorylation. Therefore, we propose that the retrograde response is an ATP homeostasis pathway coupling ATP production with ATP-mediated repression of the retrograde response by releasing Mks1 from Rtg2.

Indexed as

ATP sensingK. lactisK. waltiimitochondria to nucleus signalingMks1retrograde responseRtg2Saccharomyces cerevisiae

Identifiers

PMID24605246
PMCPMC3899953
OpenAlexW2003822984

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.