Evidence map›Paper›PMID 24604200›Full record

ArticleScience (New York, N.Y.)2014

Mechanism of the C5 stereoinversion reaction in the biosynthesis of carbapenem antibiotics.

Wei-chen Chang, Yisong Guo, Chen Wang, Susan E Butch, Amy C Rosenzweig, Amie K Boal, Carsten Krebs, J Martin Bollinger

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 138 citations in OpenAlex.

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  12. Emerging functions within the enzyme families of plant alkaloid biosynthesis.Phytochemistry reviews : proceedings of the Phytochemical Society of Europe · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Wei-chen ChangDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA.
Yisong Guo
Chen Wang
Susan E Butch
Amy C Rosenzweig
Amie K Boal
Carsten Krebs
J Martin Bollinger
Pennsylvania State University · US

Funding

Structure and Specificity in Metal Ion HomeostasisR01GM058518 · NIGMS · NORTHWESTERN UNIVERSITY · PI ROSENZWEIG, AMY C. · 1999 to 2015
$4.4M
Mechanism of Taurine: Alpha-Ketoglutarate DioxygenaseR01GM069657 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BOLLINGER, JOSEPH M, KREBS, CARSTEN · 2004 to 2016
$2.7M
Structure determination of reaction intermediates in macromolecular complexesR00GM100011 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BOAL, AMIE K · 2013 to 2015
$729k
Structure determination of reaction intermediates in macromolecular complexesK99GM100011 · NIGMS · NORTHWESTERN UNIVERSITY · PI BOAL, AMIE K · 2012 to 2013
$110k
NIGMS NIH HHS GM 058518NIGMS NIH HHS GM 069657NIGMS NIH HHS GM 100011NIGMS NIH HHS K99 GM100011NIGMS NIH HHS R00 GM100011NIGMS NIH HHS R01 GM058518NIGMS NIH HHS R01 GM069657
6 · The paper itself

Abstract

The bicyclic β-lactam/2-pyrrolidine precursor to all carbapenem antibiotics is biosynthesized by attachment of a carboxymethylene unit to C5 of L-proline followed by β-lactam ring closure. Carbapenem synthase (CarC), an Fe(II) and 2-(oxo)glutarate (Fe/2OG)-dependent oxygenase, then inverts the C5 configuration. Here we report the structure of CarC in complex with its substrate and biophysical dissection of its reaction to reveal the stereoinversion mechanism. An Fe(IV)-oxo intermediate abstracts the hydrogen (H•) from C5, and tyrosine 165, a residue not visualized in the published structures of CarC lacking bound substrate, donates H• to the opposite face of the resultant radical. The reaction oxidizes the Fe(II) cofactor to Fe(III), limiting wild-type CarC to one turnover, but substitution of the H•-donating tyrosine disables stereoinversion and confers to CarC the capacity for catalytic substrate oxidation.

Indexed as

CarbapenemsCatalysisCrystallography, X-RayEnzymesEscherichia coliHydrogenOxidation-ReductionPectobacterium carotovorumStereoisomerismTyrosineCarbapenemsEnzymesHydrogenTyrosine

Identifiers

PMID24604200
PMCPMC4160820
OpenAlexW1977681070

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.