ArticleDatabase : the journal of biological databases and curation2014
BambooGDB: a bamboo genome database with functional annotation and an analysis platform.
Article in Database : the journal of biological databases and curation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed.
- Multi-omics reveals the involvement of endophytes in the growth of Moso bamboo (Phyllostachys edulis) shoots.Communications biology · 2026Article
- Identification and Characterization ofInternational journal of molecular sciences · 2023Article
- GelFAP v2.0: an improved platform for Gene functional analysis in Gastrodia elata.BMC genomics · 2023Article
- Identification and characterization of CircRNA-associated CeRNA networks in moso bamboo under nitrogen stress.BMC plant biology · 2023Article
- Comprehensive profiling of epigenetic modifications in fast-growing Moso bamboo shoots.Plant physiology · 2023Article
- Genome-Wide Identification of the Highly ConservedInternational journal of molecular sciences · 2022Article
- High-transcriptional activation ability of bamboo SECONDARY WALL NAC transcription factors is derived from C-terminal domain.Plant biotechnology (Tokyo, Japan) · 2022Article
- A deep learning approach for orphan gene identification in moso bamboo (Phyllostachys edulis) based on the CNN + Transformer model.BMC bioinformatics · 2022Article
- A Concise Review ofPlants (Basel, Switzerland) · 2021Review
- A bamboo leaf-specific aquaporin gene PePIP2;7 is involved in abiotic stress response.Plant cell reports · 2021Article
- Bamboo Transposon Research: Current Status and Perspectives.Methods in molecular biology (Clifton, N.J.) · 2021Review
- Genome-Wide Identification and Expression Analysis of the Plant U-Box Protein Gene Family inFrontiers in genetics · 2021Article
- Genome skimming-based STMS marker discovery and its validation in temperate hill bambooJournal of genetics · 2021Article
- Organelle Visualization With Multicolored Fluorescent Markers in Bamboo.Frontiers in plant science · 2021Article
- Genome-Wide Identification of the Expansin Gene Family and Its Potential Association with Drought Stress in Moso Bamboo.International journal of molecular sciences · 2020Article
- Genome-wide analysis of laccase genes in moso bamboo highlights PeLAC10 involved in lignin biosynthesis and in response to abiotic stresses.Plant cell reports · 2020Article
- Identification of Homeobox Genes Associated with Lignification and Their Expression Patterns in Bamboo Shoots.Biomolecules · 2019Article
- Genome-Wide Investigation of the NAC Gene Family and Its Potential Association with the Secondary Cell Wall in Moso Bamboo.Biomolecules · 2019Article
- Genome-wide identification and expression analysis of brassinosteroid action-related genes during the shoot growth of moso bamboo.Molecular biology reports · 2019Article
- Genome-wide identification and expression analysis of the MYB transcription factor in moso bamboo (PeerJ · 2019Article
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7 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Bamboo, as one of the most important non-timber forest products and fastest-growing plants in the world, represents the only major lineage of grasses that is native to forests. Recent success on the first high-quality draft genome sequence of moso bamboo (Phyllostachys edulis) provides new insights on bamboo genetics and evolution. To further extend our understanding on bamboo genome and facilitate future studies on the basis of previous achievements, here we have developed BambooGDB, a bamboo genome database with functional annotation and analysis platform. The de novo sequencing data, together with the full-length complementary DNA and RNA-seq data of moso bamboo composed the main contents of this database. Based on these sequence data, a comprehensively functional annotation for bamboo genome was made. Besides, an analytical platform composed of comparative genomic analysis, protein-protein interactions network, pathway analysis and visualization of genomic data was also constructed. As discovery tools to understand and identify biological mechanisms of bamboo, the platform can be used as a systematic framework for helping and designing experiments for further validation. Moreover, diverse and powerful search tools and a convenient browser were incorporated to facilitate the navigation of these data. As far as we know, this is the first genome database for bamboo. Through integrating high-throughput sequencing data, a full functional annotation and several analysis modules, BambooGDB aims to provide worldwide researchers with a central genomic resource and an extensible analysis platform for bamboo genome. BambooGDB is freely available at http://www.bamboogdb.org/. Database URL: http://www.bamboogdb.org.
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