Evidence map›Paper›PMID 24602776›Full record

ArticleVaccine2014

Profiling human antibody responses by integrated single-cell analysis.

Adebola O Ogunniyi, Brittany A Thomas, Timothy J Politano, Navin Varadarajan, Elise Landais, Pascal Poignard, Bruce D Walker, Douglas S Kwon, J Christopher Love

Open access · bronzeAbstract read
In one paragraph

Article in Vaccine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Single-cell analysis targeting the proteome.Nature reviews. Chemistry · 2020
    Review
  10. Review
  11. Novel vaccines: Technology and development.The Journal of allergy and clinical immunology · 2019
    Review
  12. Article
  13. Two Vaccines formSphere · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Adebola O OgunniyiDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, United States.
Brittany A ThomasDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, United States.
Timothy J PolitanoDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, United States.
Navin VaradarajanDepartment of Chemical and Biomolecular Engineering, University of Houston, Houston, TX 77204, United States.
Elise LandaisInternational AIDS Vaccine Initiative, Scripps Research Institute, La Jolla, CA 92037, United States.
Pascal PoignardInternational AIDS Vaccine Initiative, Scripps Research Institute, La Jolla, CA 92037, United States.
Bruce D WalkerThe Ragon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, United States.
Douglas S KwonThe Ragon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, United States.
J Christopher LoveDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, United States; The Ragon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, United States. Electronic address: clove@mit.edu.
Massachusetts Institute of Technology · USRagon Institute of MGH, MIT and Harvard · USInternational AIDS Vaccine Initiative · USScripps Research Institute · USUniversity of Houston · US

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Ramnik J Xavier · 1991 to 2026
$35.3M
Viral correlates of neutralizing antibody responseU19AI090970 · NIAID · INTERNATIONAL AIDS VACCINE INITIATIVE · PI POIGNARD, PASCAL · 2010 to 2014
$9.3M
Impact of MHC Genotype on Ex Vivo T cell Function in Type 1 DiabetesDP3DK097681 · NIDDK · DANA-FARBER CANCER INST · PI LOVE, JOHN CHRISTOPHER, WUCHERPFENNIG, KAI W · 2012 to 2012
$3.9M
NIAID NIH HHS U19 AI090970NIAID NIH HHS U19AI090970NIDDK NIH HHS DP3 DK097681NIDDK NIH HHS P30 DK043351
6 · The paper itself

Abstract

Comprehensive characterization of the antigen-specific B cells induced during infections or following vaccination would facilitate the discovery of novel antibodies and inform how interventions shape protective humoral responses. The analysis of human B cells and their antibodies has been performed using flow cytometry to evaluate memory B cells and expanded plasmablasts, while microtechnologies have also provided a useful tool to examine plasmablasts/plasma cells after vaccination. Here we present an integrated analytical platform, using arrays of subnanoliter wells (nanowells), for constructing detailed profiles for human B cells comprising the immunophenotypes of these cells, the distribution of isotypes of the secreted antibodies, the specificity and relative affinity for defined antigens, and for a subset of cells, the genes encoding the heavy and light chains. The approach combines on-chip image cytometry, microengraving, and single-cell RT-PCR. Using clinical samples from HIV-infected subjects, we demonstrate that the method can identify antigen-specific neutralizing antibodies, is compatible with both plasmablasts/plasma cells and activated memory B cells, and is well-suited for characterizing the limited numbers of B cells isolated from tissue biopsies (e.g., colon biopsies). The technology should facilitate detailed analyses of human humoral responses for evaluating vaccines and their ability to raise protective antibody responses across multiple anatomical compartments.

Indexed as

AnimalsAntibodies, NeutralizingAntibody FormationB-LymphocytesCHO CellsCricetulusFlow CytometryHEK293 CellsHIV InfectionsHumansHybridomasImmunoglobulin IsotypesImmunologic MemoryImmunophenotypingNeutralization TestsPlasma CellsAntibodies, NeutralizingImmunoglobulin IsotypesHumoral responsesImmune profilingMicroengravingNanowellsPlasma and memory B cells analysis

Identifiers

PMID24602776
PMCPMC4164152
OpenAlexW1971395312

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.