ArticleJournal of biomedical semantics2014
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery.
Article in Journal of biomedical semantics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
84 citing papers in PubMed.
- MolMeDB RDF: transforming a relational database about biological membranes to the RDF format to increase interoperability.Journal of cheminformatics · 2026Article
- An ontology-based description of nano computed tomography measurements in electronic laboratory notebooks.Scientific data · 2026Article
- pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources.Bioinformatics (Oxford, England) · 2026Article
- Knowledge Representation of a Multicenter Adolescent and Young Adult Cancer Infrastructure: Development of the STRONG AYA Knowledge Graph.JCO clinical cancer informatics · 2026Article
- CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment.BMC medical informatics and decision making · 2025Article
- RareLink: scalable REDCap-based framework for rare disease interoperability linking international registries to FHIR and Phenopackets.NPJ genomic medicine · 2025Article
- AgroLD: a knowledge graph for the plant sciences.BMC genomic data · 2025Article
- A resource description framework (RDF) model of named entity co-occurrences in biomedical literature and its integration with PubChemRDF.Journal of cheminformatics · 2025Article
- An exploratory study combining Virtual Reality and Semantic Web for life science research using Graph2VR.Database : the journal of biological databases and curation · 2025Article
- Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases.BMC medical informatics and decision making · 2025Article
- Updates implemented in version 4 of the GlyCosmos Glycoscience Portal.Analytical and bioanalytical chemistry · 2025Article
- Cross-Standard Health Data Harmonization using Semantics of Data Elements.Scientific data · 2024Article
- The FLAIR-GG federated network of FAIR germplasm data resources.Scientific data · 2024Article
- Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation.Nucleic acids research · 2024Article
- The AusTraits plant dictionary.Scientific data · 2024Article
- DS-PACK: Tool assembly for the end-to-end support of controlled access human data sharing.Scientific data · 2024Article
- From papers to RDF-based integration of physicochemical data and adverse outcome pathways for nanomaterials.Journal of cheminformatics · 2024Article
- The IDSM mass spectrometry extension: searching mass spectra using SPARQL.Bioinformatics (Oxford, England) · 2024Article
- A multi-omics data analysis workflow packaged as a FAIR Digital Object.GigaScience · 2024Article
- IMGT/mAb-KG: the knowledge graph for therapeutic monoclonal antibodies.Frontiers in immunology · 2024Article
24 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
17 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Semanticscience Integrated Ontology (SIO) is an ontology to facilitate biomedical knowledge discovery. SIO features a simple upper level comprised of essential types and relations for the rich description of arbitrary (real, hypothesized, virtual, fictional) objects, processes and their attributes. SIO specifies simple design patterns to describe and associate qualities, capabilities, functions, quantities, and informational entities including textual, geometrical, and mathematical entities, and provides specific extensions in the domains of chemistry, biology, biochemistry, and bioinformatics. SIO provides an ontological foundation for the Bio2RDF linked data for the life sciences project and is used for semantic integration and discovery for SADI-based semantic web services. SIO is freely available to all users under a creative commons by attribution license. See website for further information: http://sio.semanticscience.org.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.