Evidence map›Paper›PMID 24599037›Full record

ArticlePloS one2014

Application of a new dual localization-affinity purification tag reveals novel aspects of protein kinase biology in Aspergillus nidulans.

Colin P De Souza, Shahr B Hashmi, Aysha H Osmani, Stephen A Osmani

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. SUMOlock reveals a more complete Aspergillus nidulans SUMOylome.Fungal genetics and biology : FG & B · 2019
    Article
  2. Article
  3. GSPlant physiology · 2018
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Cytoplasmic dynein and early endosome transport.Cellular and molecular life sciences : CMLS · 2015
    Review
  9. TRAPPII regulates exocytic Golgi exit by mediating nucleotide exchange on the Ypt31 ortholog RabERAB11.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Colin P De SouzaDepartment of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America.
Shahr B HashmiDepartment of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America.
Aysha H OsmaniDepartment of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America.
Stephen A OsmaniDepartment of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America.
The Ohio State University · US

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
The role of the NIMA kinase in mitotic regulationR01GM042564 · NIGMS · WEIS CENTER FOR RESEARCH-GEISINGER CLINC · PI OSMANI, STEPHEN A · 1989 to 2013
$4.3M
NIGMS NIH HHS GM042564NIGMS NIH HHS P01 GM068087NIGMS NIH HHS P01 GM068087-08S1NIGMS NIH HHS R01 GM042564
6 · The paper itself

Abstract

Filamentous fungi occupy critical environmental niches and have numerous beneficial industrial applications but devastating effects as pathogens and agents of food spoilage. As regulators of essentially all biological processes protein kinases have been intensively studied but how they regulate the often unique biology of filamentous fungi is not completely understood. Significant understanding of filamentous fungal biology has come from the study of the model organism Aspergillus nidulans using a combination of molecular genetics, biochemistry, cell biology and genomic approaches. Here we describe dual localization-affinity purification (DLAP) tags enabling endogenous N or C-terminal protein tagging for localization and biochemical studies in A. nidulans. To establish DLAP tag utility we endogenously tagged 17 protein kinases for analysis by live cell imaging and affinity purification. Proteomic analysis of purifications by mass spectrometry confirmed association of the CotA and NimXCdk1 kinases with known binding partners and verified a predicted interaction of the SldABub1/R1 spindle assembly checkpoint kinase with SldBBub3. We demonstrate that the single TOR kinase of A. nidulans locates to vacuoles and vesicles, suggesting that the function of endomembranes as major TOR cellular hubs is conserved in filamentous fungi. Comparative analysis revealed 7 kinases with mitotic specific locations including An-Cdc7 which unexpectedly located to mitotic spindle pole bodies (SPBs), the first such localization described for this family of DNA replication kinases. We show that the SepH septation kinase locates to SPBs specifically in the basal region of apical cells in a biphasic manner during mitosis and again during septation. This results in gradients of SepH between G1 SPBs which shift along hyphae as each septum forms. We propose that SepH regulates the septation initiation network (SIN) specifically at SPBs in the basal region of G1 cells and that localized gradients of SIN activity promote asymmetric septation.

Indexed as

Amino Acid SequenceAspergillus nidulansBenomylCell NucleusChromatography, AffinityCytoplasmic VesiclesFungal ProteinsGreen Fluorescent ProteinsInterphaseKinetochoresMicrotubulesMitosisMolecular Sequence DataProtein KinasesProtein TransportProteomicsBenomylFungal ProteinsGreen Fluorescent ProteinsProtein KinasesRecombinant Fusion Proteins

Identifiers

PMID24599037
PMCPMC3944740
OpenAlexW2023017682

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.