Evidence map›Paper›PMID 24598924›Full record

ArticleActa crystallographica. Section F, Structural biology communications2014

Tetartohedral twinning in IDI-2 from Thermus thermophilus: crystallization under anaerobic conditions.

Jerome de Ruyck, Heidi L Schubert, Matthew W Janczak, C Dale Poulter

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jerome de RuyckDepartment of Chemistry, University of Namur, Rue de Bruxelles 61, 5000 Namur, Belgium.
Heidi L SchubertDepartment of Biochemistry, University of Utah School of Medicine, 15 North Medical Drive, Salt Lake City, UT 84112, USA.
Matthew W JanczakDepartment of Chemistry, University of Utah, 315 South 1400 East, Rm 2020, Salt Lake City, UT 84112, United States.
C Dale PoulterDepartment of Chemistry, University of Utah, 315 South 1400 East, Rm 2020, Salt Lake City, UT 84112, United States.
University of Utah · USUniversity of Namur · BE

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
STUDIES OF STEROL BIOSYNTHESISR01GM025521 · NIGMS · UNIVERSITY OF UTAH · PI POULTER, CHARLES DALE · 1985 to 2014
$5.9M
NIGMS NIH HHS GM 25521NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393NIGMS NIH HHS R01 GM025521
6 · The paper itself

Abstract

Type-2 isopentenyl diphosphate isomerase (IDI-2) is a key flavoprotein involved in the biosynthesis of isoprenoids. Since fully reduced flavin mononucleotide (FMNH2) is needed for activity, it was decided to crystallize the enzyme under anaerobic conditions in order to understand how this reduced cofactor binds within the active site and interacts with the substrate isopentenyl diphosphate (IPP). In this study, the protein was expressed and purified under aerobic conditions and then reduced and crystallized under anaerobic conditions. Crystals grown by the sitting-drop vapour-diffusion method and then soaked with IPP diffracted to 2.1 Å resolution and belonged to the hexagonal space group P6322, with unit-cell parameters a = b = 133.3, c = 172.9 Å.

Indexed as

Bacterial ProteinsCarbon-Carbon Double Bond IsomerasesCrystallizationCrystallography, X-RayHemiterpenesOxygenThermus thermophilusBacterial ProteinsCarbon-Carbon Double Bond IsomerasesHemiterpenesisopentenyldiphosphate delta-isomeraseOxygenanaerobicflavoproteinIDI-2isopentenyl diphosphate isomeraseisoprenoidtwinning

Identifiers

PMID24598924
PMCPMC3944699
OpenAlexW2085902878

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.