Evidence map›Paper›PMID 24598912›Full record

ArticleActa crystallographica. Section F, Structural biology communications2014

The 2.2 Å resolution structure of the catalase-peroxidase KatG from Synechococcus elongatus PCC7942.

Saori Kamachi, Kei Wada, Masahiro Tamoi, Shigeru Shigeoka, Toshiji Tada

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Saori KamachiSchool of Graduate Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
Kei WadaOrganization for Promotion of Tenure Track, University of Miyazaki, Miyazaki, Miyazaki 889-1692, Japan.
Masahiro TamoiFaculty of Agriculture, Kinki University, Nara, Nara 631-8505, Japan.
Shigeru ShigeokaFaculty of Agriculture, Kinki University, Nara, Nara 631-8505, Japan.
Toshiji TadaSchool of Graduate Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
Kindai University · JPOsaka Prefecture University · JPUniversity of Miyazaki · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The crystal structure of catalase-peroxidase from Synechococcus elongatus PCC7942 (SeKatG) was solved by molecular replacement and refined to an Rwork of 16.8% and an Rfree of 20.6% at 2.2 Å resolution. The asymmetric unit consisted of only one subunit of the catalase-peroxidase molecule, including a protoporphyrin IX haem moiety and two sodium ions. A typical KatG covalent adduct was formed, Met248-Tyr222-Trp94, which is a key structural element for catalase activity. The crystallographic equivalent subunit was created by a twofold symmetry operation to form the functional dimer. The overall structure of the dimer was quite similar to other KatGs. One sodium ion was located close to the proximal Trp314. The location and configuration of the proximal cation site were very similar to those of typical peroxidases such as ascorbate peroxidase. These features may provide a structural basis for the behaviour of the radical localization/delocalization during the course of the enzymatic reaction.

Indexed as

Bacterial ProteinsCatalaseCatalytic DomainCoordination ComplexesCrystallography, X-RayModels, MolecularPeroxidaseProtein Structure, SecondarySodiumSynechococcusBacterial ProteinsCatalaseCoordination ComplexesPeroxidaseSodiumcatalase-peroxidaseKatGSynechococcus elongatus PCC 7942

Identifiers

PMID24598912
PMCPMC3944687
OpenAlexW2028532264

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.