Evidence map›Paper›PMID 24598257›Full record

ArticleNucleic acids research2014

Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in Drosophila.

Weili Cai, Chao Wang, Yeran Li, Changfu Yao, Lu Shen, Sanzhen Liu, Xiaomin Bao, Patrick S Schnable, Jack Girton, Jørgen Johansen and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

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  6. Review
  7. Drosophila P75 safeguards oogenesis by preventing H3K9me2 spreading.Journal of genetics and genomics = Yi chuan xue bao · 2020
    Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Weili CaiDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Chao WangDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Yeran LiDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Changfu YaoDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Lu ShenDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Sanzhen LiuDepartment of Agronomy, Iowa State University, Ames, IA 50011, USA.
Xiaomin BaoDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Patrick S SchnableDepartment of Agronomy, Iowa State University, Ames, IA 50011, USA Data2Bio LLC, Ames, IA 50011, USA.
Jack GirtonDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Jørgen JohansenDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Kristen M JohansenDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA kristen@iastate.edu.
Iowa State University · US

Funding

Regulation of Chromatin Structure byPhosphorylationR01GM062916 · NIGMS · IOWA STATE UNIVERSITY · PI JOHANSEN, JORGEN, JOHANSEN, KRISTEN M · 2001 to 2014
$3.5M
NIGMS NIH HHS GM062916
6 · The paper itself

Abstract

In this study we have determined the genome-wide relationship of JIL-1 kinase mediated H3S10 phosphorylation with gene expression and the distribution of the epigenetic H3K9me2 mark. We show in wild-type salivary gland cells that the H3S10ph mark is predominantly enriched at active genes whereas the H3K9me2 mark is largely associated with inactive genes. Comparison of global transcription profiles in salivary glands from wild-type and JIL-1 null mutant larvae revealed that the expression levels of 1539 genes changed at least 2-fold in the mutant and that a substantial number (49%) of these genes were upregulated whereas 51% were downregulated. Furthermore, the results showed that downregulation of genes in the mutant was correlated with higher levels or acquisition of the H3K9me2 mark whereas upregulation of a gene was correlated with loss of or diminished H3K9 dimethylation. These results are compatible with a model where gene expression levels are modulated by the levels of the H3K9me2 mark independent of the state of the H3S10ph mark, which is not required for either transcription or gene activation to occur. Rather, H3S10 phosphorylation functions to indirectly maintain active transcription by counteracting H3K9 dimethylation and gene silencing.

Indexed as

Epigenesis, GeneticProtein Processing, Post-TranslationalAnimalsChromosome MappingDrosophila melanogasterDrosophila ProteinsFemaleGenome, InsectHistonesLarvaMaleMethylationPhosphorylationProtein Serine-Threonine KinasesProtein TransportSalivary GlandsDrosophila ProteinsHistonesJIL-1 protein, DrosophilaProtein Serine-Threonine Kinases

Identifiers

PMID24598257
PMCPMC4027157
OpenAlexW2117255447

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.