Evidence map›Paper›PMID 24596087›Full record

ArticleThe Journal of biological chemistry2014

A transient interaction between the phosphate binding loop and switch I contributes to the allosteric network between receptor and nucleotide in Gαi1.

Tarjani M Thaker, Maruf Sarwar, Anita M Preininger, Heidi E Hamm, T M Iverson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Mechanism of the intrinsic arginine finger in heterotrimeric G proteins.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  4. Article
  5. Article
  6. Chemistry and biology of the initial steps in vision: the Friedenwald lecture.Investigative ophthalmology & visual science · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Tarjani M ThakerDepartment of Biochemistry and Vanderbilt University Medical Center, Nashville, Tennessee 37232.
Maruf SarwarDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee 37232.
Anita M PreiningerDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee 37232.
Heidi E HammDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee 37232. Electronic address: Heidi.hamm@vanderbilt.edu.
T M IversonDepartment of Biochemistry and Vanderbilt University Medical Center, Nashville, Tennessee 37232; Department of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee 37232. Electronic address: tina.iverson@vanderbilt.edu.
Vanderbilt University Medical Center · US

Funding

Shop Module CoreP30EY008126 · NEI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Kevin L Schey · 1989 to 2026
$19.6M
IMMUNOLOGICAL STUDIES OF VISUAL TRANSDUCTION PATHWAYSR01EY006062 · NEI · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 1985 to 2017
$5.6M
Stabilization of Membrane Protein Signaling ComplexesR01GM095633 · NIGMS · VANDERBILT UNIVERSITY · PI IVERSON, T M · 2010 to 2013
$1.2M
NEI NIH HHS EY006062NEI NIH HHS P30 EY008126NEI NIH HHS P30EY008126NEI NIH HHS R01 EY006062NIGMS NIH HHS GM095633NIGMS NIH HHS R01 GM095633
6 · The paper itself

Abstract

Receptor-mediated activation of the Gα subunit of heterotrimeric G proteins requires allosteric communication between the receptor binding site and the guanine nucleotide binding site, which are separated by >30 Å. Structural changes in the allosteric network connecting these sites are predicted to be transient in the wild-type Gα subunit, making studies of these connections challenging. In the current work, site-directed mutants that alter the energy barriers between the activation states are used as tools to better understand the transient features of allosteric signaling in the Gα subunit. The observed differences in relative receptor affinity for intact Gαi1 subunits versus C-terminal Gαi1 peptides harboring the K345L mutation are consistent with this mutation modulating the allosteric network in the protein subunit. Measurement of nucleotide exchange rates, affinity for metarhodopsin II, and thermostability suggest that the K345L Gαi1 variant has reduced stability in both the GDP-bound and nucleotide-free states as compared with wild type but similar stability in the GTPγS-bound state. High resolution x-ray crystal structures reveal conformational changes accompanying the destabilization of the GDP-bound state. Of these, the conformation for Switch I was stabilized by an ionic interaction with the phosphate binding loop. Further site-directed mutagenesis suggests that this interaction between Switch I and the phosphate binding loop is important for receptor-mediated nucleotide exchange in the wild-type Gαi1 subunit.

Indexed as

Allosteric RegulationAmino Acid SubstitutionAnimalsCrystallography, X-RayGTP-Binding Protein alpha Subunits, Gi-GoGuanosine 5'-O-(3-Thiotriphosphate)Guanosine DiphosphateMutation, MissenseProtein Structure, SecondaryRatsGnai1 protein, ratGTP-Binding Protein alpha Subunits, Gi-GoGuanosine 5'-O-(3-Thiotriphosphate)Guanosine DiphosphateAllosteric RegulationG Protein-coupled Receptors (GPCR)G ProteinsHeterotrimeric G ProteinsRhodopsinSignal Transduction

Identifiers

PMID24596087
PMCPMC4036270
OpenAlexW2054815848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.