Evidence map›Paper›PMID 24595210›Full record

ArticlePloS one2014

Genetic variation in genes encoding airway epithelial potassium channels is associated with chronic rhinosinusitis in a pediatric population.

Michael T Purkey, Jin Li, Frank Mentch, Struan F A Grant, Martin Desrosiers, Hakon Hakonarson, Elina Toskala

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Pediatric Rhinosinusitis.Current treatment options in allergy · 2016
    Article
  4. Risk factors for chronic rhinosinusitis.Current opinion in allergy and clinical immunology · 2015
    Review
  5. Review
  6. Epidemiology of chronic rhinosinusitis, selected risk factors, comorbidities, and economic burden.GMS current topics in otorhinolaryngology, head and neck surgery · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Michael T PurkeyDepartment of Otorhinolaryngology, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Jin LiCenter for Applied Genomics, the Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Frank MentchCenter for Applied Genomics, the Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Struan F A GrantDivision of Human Genetics, the Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Martin DesrosiersDepartment of Otolaryngology, Montreal General Hospital, McGill University, Montreal, Québec Canada.
Hakon HakonarsonCenter for Applied Genomics, the Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America; Division of Human Genetics, the Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America; Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Elina ToskalaDepartment of Otolaryngology, Temple University, Philadelphia, Pennsylvania, United States of America.
Children's Hospital of Philadelphia · USHospital of the University of Pennsylvania · USMontreal General Hospital · CATemple University · USUniversity of Pennsylvania · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundApical potassium channels regulate ion transport in airway epithelial cells and influence air surface liquid (ASL) hydration and mucociliary clearance (MCC). We sought to identify whether genetic variation within genes encoding airway potassium channels is associated with chronic rhinosinusitis (CRS).

methodsSingle nucleotide polymorphism (SNP) genotypes for selected potassium channels were derived from data generated on the Illumnia HumanHap550 BeadChip or Illumina Human610-Quad BeadChip for 828 unrelated individuals diagnosed with CRS and 5,083 unrelated healthy controls from the Children's Hospital of Philadelphia (CHOP). Statistical analysis was performed with set-based tests using PLINK, and corrected for multiple testing.

resultsSet-based case control analysis revealed the gene KCNMA1 was associated with CRS in our Caucasian subset of the cohort (598 CRS cases and 3,489 controls; p = 0.022, based on 10,000 permutations). In addition there was borderline evidence that the gene KCNQ5 (p = 0.0704) was associated with the trait in our African American subset of the cohort (230 CRS cases and 1,594 controls). In addition to the top significant SNPs rs2917454 and rs6907229, imputation analysis uncovered additional genetic variants in KCNMA1 and in KCNQ5 that were associated with CRS.

conclusionsWe have implicated two airway epithelial potassium channels as novel susceptibility loci in contributing to the pathogenesis of CRS.

Indexed as

Polymorphism, Single NucleotideCase-Control StudiesChildChronic DiseaseHumansPotassium ChannelsRhinitisSinusitisTracheaPotassium Channels

Identifiers

PMID24595210
PMCPMC3940609
OpenAlexW1988693456

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.