Evidence map›Paper›PMID 24595068›Full record

ArticlePloS one2014

Metabolomic analysis of three Mollicute species.

Anna A Vanyushkina, Gleb Y Fisunov, Alexey Y Gorbachev, Dmitri E Kamashev, Vadim M Govorun

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Anna A VanyushkinaRussian Institute of Physico-Chemical Medicine, Moscow, Russian Federation.
Gleb Y FisunovRussian Institute of Physico-Chemical Medicine, Moscow, Russian Federation.
Alexey Y GorbachevRussian Institute of Physico-Chemical Medicine, Moscow, Russian Federation.
Dmitri E KamashevRussian Institute of Physico-Chemical Medicine, Moscow, Russian Federation; Russian Research Center Kurchatov Institute, Moscow, Russian Federation.
Vadim M GovorunRussian Institute of Physico-Chemical Medicine, Moscow, Russian Federation; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russian Federation; Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region, Russian Federation.
Physico-Technical Institute · RUInstitute of Bioorganic Chemistry · RUKurchatov Institute · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a systematic study of three bacterial species that belong to the class Mollicutes, the smallest and simplest bacteria, Spiroplasma melliferum, Mycoplasma gallisepticum, and Acholeplasma laidlawii. To understand the difference in the basic principles of metabolism regulation and adaptation to environmental conditions in the three species, we analyzed the metabolome of these bacteria. Metabolic pathways were reconstructed using the proteogenomic annotation data provided by our lab. The results of metabolome, proteome and genome profiling suggest a fundamental difference in the adaptation of the three closely related Mollicute species to stress conditions. As the transaldolase is not annotated in Mollicutes, we propose variants of the pentose phosphate pathway catalyzed by annotated enzymes for three species. For metabolite detection we employed high performance liquid chromatography coupled with mass spectrometry. We used liquid chromatography method - hydrophilic interaction chromatography with silica column - as it effectively separates highly polar cellular metabolites prior to their detection by mass spectrometer.

Indexed as

Biosynthetic PathwaysHydrolasesMass SpectrometryMetabolomeMetabolomicsPentose Phosphate PathwayTenericutesTerpenesarginine deiminaseHydrolasesTerpenes

Identifiers

PMID24595068
PMCPMC3942410
OpenAlexW2047215659

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.