Evidence map›Paper›PMID 24594919›Full record

ArticlePloS one2014

Zscan4 is regulated by PI3-kinase and DNA-damaging agents and directly interacts with the transcriptional repressors LSD1 and CtBP2 in mouse embryonic stem cells.

Michael P Storm, Benjamin Kumpfmueller, Heather K Bone, Michael Buchholz, Yolanda Sanchez Ripoll, Julian B Chaudhuri, Hitoshi Niwa, David Tosh, Melanie J Welham

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Reprogramming Chromosome Ends by Functional Histone Acetylation.International journal of molecular sciences · 2024
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  20. Transient bursts of Zscan4 expression are accompanied by the rapid derepression of heterochromatin in mouse embryonic stem cells.DNA research : an international journal for rapid publication of reports on genes and genomes · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Michael P StormCentre for Regenerative Medicine and Departments of Pharmacy & Pharmacology, University of Bath, Bath, United Kingdom.
Benjamin KumpfmuellerCentre for Regenerative Medicine and Departments of Pharmacy & Pharmacology, University of Bath, Bath, United Kingdom; Department of Chemical Engineering, University of Bath, Bath, United Kingdom.
Heather K BoneCentre for Regenerative Medicine and Departments of Pharmacy & Pharmacology, University of Bath, Bath, United Kingdom.
Michael BuchholzDepartment of Biology and Biochemistry, University of Bath, Bath, United Kingdom.
Yolanda Sanchez RipollCentre for Regenerative Medicine and Departments of Pharmacy & Pharmacology, University of Bath, Bath, United Kingdom.
Julian B ChaudhuriDepartment of Chemical Engineering, University of Bath, Bath, United Kingdom.
Hitoshi NiwaRIKEN Centre for Developmental Biology, Kobe, Hyogo, Japan.
David ToshDepartment of Biology and Biochemistry, University of Bath, Bath, United Kingdom.
Melanie J WelhamCentre for Regenerative Medicine and Departments of Pharmacy & Pharmacology, University of Bath, Bath, United Kingdom.
University of Bath · GBRIKEN Center for Computational Science · JP

Funding

Medical Research Council G0801108
6 · The paper itself

Abstract

The Zscan4 family of genes, encoding SCAN-domain and zinc finger-containing proteins, has been implicated in the control of early mammalian embryogenesis as well as the regulation of pluripotency and maintenance of genome integrity in mouse embryonic stem cells. However, many features of this enigmatic family of genes are poorly understood. Here we show that undifferentiated mouse embryonic stem cell (ESC) lines simultaneously express multiple members of the Zscan4 gene family, with Zscan4c, Zscan4f and Zscan4-ps2 consistently being the most abundant. Despite this, between only 0.1 and 0.7% of undifferentiated mouse pluripotent stem cells express Zscan4 protein at a given time, consistent with a very restricted pattern of Zscan4 transcripts reported previously. Herein we demonstrate that Zscan4 expression is regulated by the p110α catalytic isoform of phosphoinositide 3-kinases and is induced following exposure to a sub-class of DNA-damage-inducing agents, including Zeocin and Cisplatin. Furthermore, we observe that Zscan4 protein expression peaks during the G2 phase of the cell cycle, suggesting that it may play a critical role at this checkpoint. Studies with GAL4-fusion proteins suggest a role for Zscan4 in transcriptional regulation, further supported by the fact that protein interaction analyses demonstrate that Zscan4 interacts with both LSD1 and CtBP2 in ESC nuclei. This study advances and extends our understanding of Zscan4 expression, regulation and mechanism of action. Based on our data we propose that Zscan4 may regulate gene transcription in mouse ES cells through interaction with LSD1 and CtBP2.

Indexed as

DNA DamageAlcohol OxidoreductasesAnimalsBase SequenceCo-Repressor ProteinsDNA-Binding ProteinsDNA PrimersEmbryonic Stem CellsHistone DemethylasesMiceOxidoreductases, N-DemethylatingPhosphatidylinositol 3-KinasesPhosphoproteinsPolymerase Chain ReactionProtein BindingRepressor ProteinsAlcohol OxidoreductasesCo-Repressor ProteinsCtbp2 protein, mouseDNA-Binding ProteinsDNA PrimersHistone DemethylasesKDM1a protein, mouseOxidoreductases, N-DemethylatingPhosphatidylinositol 3-KinasesPhosphoproteinsRepressor ProteinsTranscription FactorsZscan4c protein, mouse

Identifiers

PMID24594919
PMCPMC3940611
OpenAlexW2033988165

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.