Evidence map›Paper›PMID 24594682›Full record

ArticlePloS one2014

MARIS: method for analyzing RNA following intracellular sorting.

Siniša Hrvatin, Francis Deng, Charles W O'Donnell, David K Gifford, Douglas A Melton

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 121 citations in OpenAlex.

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  14. miR-409-3p repressesFrontiers in neuroscience · 2022
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Siniša HrvatinThe Harvard Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Harvard University, Cambridge, Massachusetts, United States of America.
Francis DengThe Harvard Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Harvard University, Cambridge, Massachusetts, United States of America.
Charles W O'DonnellThe Harvard Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Harvard University, Cambridge, Massachusetts, United States of America; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
David K GiffordComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Douglas A MeltonThe Harvard Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Harvard University, Cambridge, Massachusetts, United States of America; Howard Hughes Medical Institute, Harvard University, Cambridge, Massachusetts, United States of America.
Harvard University · USHoward Hughes Medical Institute · USMassachusetts Institute of Technology · US

Funding

Pancreatic Islet Design & Engineering (SysCODE 3 of 10)RL1DK081184 · NIDDK · HARVARD UNIVERSITY · PI MELTON, DOUGLAS A · 2007 to 2011
$2.8M
Integrated Genome Discovery at Single Base Pair ResolutionU01HG007037 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GIFFORD, DAVID K · 2012 to 2015
$2.2M
Howard Hughes Medical InstituteNHGRI NIH HHS U01 HG007037NHLBI NIH HHS 1U01HL10040804NIDDK NIH HHS 2U01DK07247307NIDDK NIH HHS RL1 DK081184NIDDK NIH HHS RL1DK081184
6 · The paper itself

Abstract

Transcriptional profiling is a key technique in the study of cell biology that is limited by the availability of reagents to uniquely identify specific cell types and isolate high quality RNA from them. We report a Method for Analyzing RNA following Intracellular Sorting (MARIS) that generates high quality RNA for transcriptome profiling following cellular fixation, intracellular immunofluorescent staining and FACS. MARIS can therefore be used to isolate high quality RNA from many otherwise inaccessible cell types simply based on immunofluorescent tagging of unique intracellular proteins. As proof of principle, we isolate RNA from sorted human embryonic stem cell-derived insulin-expressing cells as well as adult human β cells. MARIS is a basic molecular biology technique that could be used across several biological disciplines.

Indexed as

Cells, CulturedEmbryonic Stem CellsFlow CytometryHumansIslets of LangerhansRNATranscription, GeneticRNA

Identifiers

PMID24594682
PMCPMC3940959
OpenAlexW2171236700

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.