Evidence map›Paper›PMID 24594543›Full record

ArticleScientific reports2014

Cephalopod eye evolution was modulated by the acquisition of Pax-6 splicing variants.

Masa-aki Yoshida, Kei Yura, Atsushi Ogura

Abstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Eye Development inFrontiers in physiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Masa-aki YoshidaResearch fellow of the Japan Society for the Promotion of Science, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.
Kei Yura1] Computational Biology, Graduate School of Humanities and Sciences [2] Center for Informational Biology, Ochanomizu University, 2-1-1 Otsuka, Bunkyo, Tokyo 112-8610, Japan.
Atsushi OguraNagahama Institute of Bio-Science and Technology, 1266 Tamura, Nagahama, 526-0829, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previous studies have reported that the developmental processes of vertebrate eyes are controlled by four Pax-6 splicing variants, each modulating different downstream genes, whereas those of insect eyes are controlled by duplicated Pax-6 genes. Cephalopods belong to the Protostomes but possess a camera-type eye similar to those in vertebrates. We examined Pax-6 variations in the squid and found five types of Pax-6 splicing variants but no duplication of the Pax-6 gene. In the five splicing variants, the splicing patterns were produced by the combination of two additional exons to the ortholog and one jettisoned exon containing most of the Homeobox domain (HD). These five variants show spatio-temporal patterns of gene expression during development in the squid. Our study suggests that cephalopods acquired Pax-6 splicing variants independent of those in vertebrates and that these variants were similarly utilized in the development of the squid eye.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBase SequenceCephalopodaExonsEyeEye ProteinsGene Expression Regulation, DevelopmentalHomeodomain ProteinsIntronsMolecular Sequence DataPaired Box Transcription FactorsPAX6 Transcription FactorRepressor ProteinsSequence AlignmentEye ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPAX6 Transcription FactorRepressor Proteins

Identifiers

PMID24594543
PMCPMC3942700

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.