Evidence map›Paper›PMID 24591642›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Understanding the antagonism of retinoblastoma protein dephosphorylation by PNUTS provides insights into the PP1 regulatory code.

Meng S Choy, Martina Hieke, Ganesan Senthil Kumar, Greyson R Lewis, Kristofer R Gonzalez-DeWhitt, Rene P Kessler, Benjamin J Stein, Manuel Hessenberger, Angus C Nairn, Wolfgang Peti and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 134 citations in OpenAlex.

  1. Article
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  11. A protein phosphatase 1 specificProceedings of the National Academy of Sciences of the United States of America · 2024
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  13. Review
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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Meng S ChoyDepartments of Molecular Pharmacology, Physiology, and Biotechnology, Molecular Biology, Cell Biology, and Biochemistry, and Chemistry, Brown University, Providence, RI 02912.
Martina Hieke
Ganesan Senthil Kumar
Greyson R Lewis
Kristofer R Gonzalez-DeWhitt
Rene P Kessler
Benjamin J Stein
Manuel Hessenberger
Angus C Nairn
Wolfgang Peti
Rebecca Page
Institute of Macromolecular Chemistry · UABrown University · USYale University · US

Funding

X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI ORVILLE, ALLEN M · 1998 to 2011
$32.2M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
The Regulation of PP1 in the NucleusR01GM098482 · NIGMS · UNIVERSITY OF ARIZONA · PI PAGE, REBECCA · 2011 to 2019
$2.8M
NCRR NIH HHS P41 RR012408NCRR NIH HHS P41RR012408NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM098482NIGMS NIH HHS R01GM098482
6 · The paper itself

Abstract

The serine/threonine protein phosphatase 1 (PP1) dephosphorylates hundreds of key biological targets by associating with nearly 200 regulatory proteins to form highly specific holoenzymes. However, how these proteins direct PP1 specificity and the ability to predict how these PP1 interacting proteins bind PP1 from sequence alone is still missing. PP1 nuclear targeting subunit (PNUTS) is a PP1 targeting protein that, with PP1, plays a central role in the nucleus, where it regulates chromatin decondensation, RNA processing, and the phosphorylation state of fundamental cell cycle proteins, including the retinoblastoma protein (Rb), p53, and MDM2. The molecular function of PNUTS in these processes is completely unknown. Here, we show that PNUTS, which is intrinsically disordered in its free form, interacts strongly with PP1 in a highly extended manner. Unexpectedly, PNUTS blocks one of PP1's substrate binding grooves while leaving the active site accessible. This interaction site, which we have named the arginine site, allowed us to define unique PP1 binding motifs, which advances our ability to predict how more than a quarter of the known PP1 regulators bind PP1. Additionally, the structure shows how PNUTS inhibits the PP1-mediated dephosphorylation of critical substrates, especially Rb, by blocking their binding sites on PP1, insights that are providing strategies for selectively enhancing Rb activity.

Indexed as

Models, MolecularProtein ConformationAmino Acid SequenceCalorimetryChromatin Assembly and DisassemblyCloning, MolecularComputational BiologyCrystallizationDNA-Binding ProteinsGene Expression Regulation, EnzymologicHumansMagnetic Resonance SpectroscopyMolecular Sequence DataNuclear ProteinsPhosphorylationProtein Interaction Domains and MotifsDNA-Binding ProteinsMDM2 protein, humanNuclear ProteinsPPP1R10 protein, humanProtein Phosphatase 1Proto-Oncogene Proteins c-mdm2Retinoblastoma ProteinRNA-Binding Proteinsenzyme regulationenzyme specificitynuclear magnetic resonancenuclear phosphatasesX-ray crystal structure

Identifiers

PMID24591642
PMCPMC3964120
OpenAlexW2070033946

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.