Evidence map›Paper›PMID 24591378›Full record

ArticleMicrobiologyOpen2014

In silico analysis of AHJD-like viruses, Staphylococcus aureus phages S24-1 and S13', and study of phage S24-1 adsorption.

Jumpei Uchiyama, Iyo Takemura-Uchiyama, Shin-Ichiro Kato, Miho Sato, Takako Ujihara, Hidehito Matsui, Hideaki Hanaki, Masanori Daibata, Shigenobu Matsuzaki

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  9. Isolation and characterization of theAIMS microbiology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jumpei UchiyamaDepartment of Microbiology and Infection, Faculty of Medicine, Kochi University, Nankoku City, Kochi, Japan; Center for Innovative and Translational Medicine, Faculty of Medicine, Kochi University, Nankoku City, Kochi, Japan.
Iyo Takemura-Uchiyama
Shin-Ichiro Kato
Miho Sato
Takako Ujihara
Hidehito Matsui
Hideaki Hanaki
Masanori Daibata
Shigenobu Matsuzaki
Kōchi University · JPKitasato University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcus aureus is a clinically important bacterium that is commensal in both humans and animals. Bacteriophage (phage) attachment to the host bacterial surface is an important process during phage infection, which involves interactions between phage receptor-binding proteins and host receptor molecules. However, little information is available on the receptor-binding protein of S. aureus phages. S. aureus virulent phages S24-1 and S13' (family Podoviridae, genus AHJD-like viruses) were isolated from sewage. In the present study, we investigated the receptor-binding protein of AHJD-like viruses using phage S24-1. First, based on a comparative genomic analysis of phages S24-1 and S13', open reading frame 16 (ORF16) of phage S24-1 was speculated to be the receptor-binding protein, which possibly determines the host range. Second, we demonstrated that this was the receptor-binding protein of phage S24-1. Third, our study suggested that wall teichoic acids in the cell walls of S. aureus are the main receptor molecules for ORF16 and phage S24-1. Finally, the C-terminal region of ORF16 may be essential for binding to S. aureus. These results strongly suggest that ORF16 of phage S24-1 and its homologs may be the receptor-binding proteins of AHJD-like viruses.

Indexed as

Virus AttachmentDNA, ViralMolecular Sequence DataOpen Reading FramesPodoviridaeReceptors, VirusSequence Analysis, DNASewageStaphylococcus aureusStaphylococcus PhagesTeichoic AcidsDNA, ViralReceptors, VirusSewageTeichoic AcidsBacteriophagephage adsorptionStaphylococcus aureuswall teichoic acid

Identifiers

PMID24591378
PMCPMC3996573
OpenAlexW2000047180

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.