Evidence map›Paper›PMID 24591301›Full record

ArticleProtein science : a publication of the Protein Society2014

Contribution of hydrogen bonds to protein stability.

C Nick Pace, Hailong Fu, Katrina Lee Fryar, John Landua, Saul R Trevino, David Schell, Richard L Thurlkill, Satoshi Imura, J Martin Scholtz, Ketan Gajiwala and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 214 papers.

0numbers the graph read from it
0cells of the map it votes in
214citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

214 citing papers in PubMed, 561 citations in OpenAlex.

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  11. High-pH NMR to Identify Macromolecular Hydrogen-Bonds and Foldons.Journal of the American Chemical Society · 2026
    Article
  12. Article
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  17. Article
  18. High-pH NMR to Identify Macromolecular Hydrogen-Bonds and Foldons.bioRxiv : the preprint server for biology · 2026
    Article
  19. Review
  20. Article

154 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 3 countries.

C Nick PaceDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, 77843; Department of Molecular and Cellular Medicine, Texas A&M University Health Science Center, College Station, Texas, 77843.
Hailong Fu
Katrina Lee Fryar
John Landua
Saul R Trevino
David Schell
Richard L Thurlkill
Satoshi Imura
J Martin Scholtz
Ketan Gajiwala
Jozef Sevcik
Lubica Urbanikova
Jeffery K Myers
Kazufumi Takano
Eric J Hebert
Bret A Shirley
Gerald R Grimsley
Texas A&M University · USTexas A&M Health Science Center · USSlovak Academy of Sciences · SKAbbVie (United States) · USDavidson College · USHouston Baptist University · USKyoto Prefectural University · JPPfizer (United States) · USUniversity of Louisiana at Monroe · US

Funding

ENERGETICS AND MECHANISM OF FOLDING OF RIBONUCLEASE T1R01GM037039 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI PACE, CARLOS N · 1986 to 2006
$1.6M
LOCAL AND LONG RANGE INTERACTIONS IN PROTEIN FOLDINGR01GM052483 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI SCHOLTZ, J. MARTIN · 2001 to 2004
$806k
HIERARCHY OF PROTEIN FOLDING AND STABILITYR29GM052483 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI SCHOLTZ, J. MARTIN · 1995 to 1999
–
NIGMS NIH HHS GM 37039NIGMS NIH HHS GM 52483
6 · The paper itself

Abstract

Our goal was to gain a better understanding of the contribution of the burial of polar groups and their hydrogen bonds to the conformational stability of proteins. We measured the change in stability, Δ(ΔG), for a series of hydrogen bonding mutants in four proteins: villin headpiece subdomain (VHP) containing 36 residues, a surface protein from Borrelia burgdorferi (VlsE) containing 341 residues, and two proteins previously studied in our laboratory, ribonucleases Sa (RNase Sa) and T1 (RNase T1). Crystal structures were determined for three of the hydrogen bonding mutants of RNase Sa: S24A, Y51F, and T95A. The structures are very similar to wild type RNase Sa and the hydrogen bonding partners form intermolecular hydrogen bonds to water in all three mutants. We compare our results with previous studies of similar mutants in other proteins and reach the following conclusions. (1) Hydrogen bonds contribute favorably to protein stability. (2) The contribution of hydrogen bonds to protein stability is strongly context dependent. (3) Hydrogen bonds by side chains and peptide groups make similar contributions to protein stability. (4) Polar group burial can make a favorable contribution to protein stability even if the polar groups are not hydrogen bonded. (5) The contribution of hydrogen bonds to protein stability is similar for VHP, a small protein, and VlsE, a large protein.

Indexed as

Protein StabilityBacterial ProteinsBorrelia burgdorferiEntropyHydrogen BondingMicrofilament ProteinsModels, MolecularProtein ConformationProteinsRibonucleasesRibonuclease T1Streptomyces aureofaciensBacterial ProteinsMicrofilament ProteinsProteinsRibonucleasesribonuclease Sa3Ribonuclease T1villinconformational entropyhydrogen bondshydrophobic bondslarge proteinsprotein stabilitysmall proteins

Identifiers

PMID24591301
PMCPMC4005716
OpenAlexW2130086970

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.