Evidence map›Paper›PMID 24590857›Full record

ArticlePlant physiology2014

Metabolic flux analysis of plastidic isoprenoid biosynthesis in poplar leaves emitting and nonemitting isoprene.

Andrea Ghirardo, Louwrance Peter Wright, Zhen Bi, Maaria Rosenkranz, Pablo Pulido, Manuel Rodríguez-Concepción, Ülo Niinemets, Nicolas Brüggemann, Jonathan Gershenzon, Jörg-Peter Schnitzler

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 136 citations in OpenAlex.

  1. Metabolite control of enzyme activity links stress to biosynthetic regulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  6. A Novel Isoprene Synthase from the Monocot TreeInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Combination of long-termPlant methods · 2022
    Article
  11. Article
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  14. Article
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  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Andrea GhirardoResearch Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany.
Louwrance Peter Wright
Zhen Bi
Maaria Rosenkranz
Pablo Pulido
Manuel Rodríguez-Concepción
Ülo Niinemets
Nicolas Brüggemann
Jonathan Gershenzon
Jörg-Peter Schnitzler
Helmholtz Zentrum München · DECenter for Research in Agricultural Genomics · ESMax Planck Institute for Chemical Ecology · DEEstonian University of Life Sciences · EEForschungszentrum Jülich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plastidic 2-C-methyl-D-erythritol-4-phosphate (MEP) pathway is one of the most important pathways in plants and produces a large variety of essential isoprenoids. Its regulation, however, is still not well understood. Using the stable isotope 13C-labeling technique, we analyzed the carbon fluxes through the MEP pathway and into the major plastidic isoprenoid products in isoprene-emitting and transgenic isoprene-nonemitting (NE) gray poplar (Populus×canescens). We assessed the dependence on temperature, light intensity, and atmospheric [CO2]. Isoprene biosynthesis was by far (99%) the main carbon sink of MEP pathway intermediates in mature gray poplar leaves, and its production required severalfold higher carbon fluxes compared with NE leaves with almost zero isoprene emission. To compensate for the much lower demand for carbon, NE leaves drastically reduced the overall carbon flux within the MEP pathway. Feedback inhibition of 1-deoxy-D-xylulose-5-phosphate synthase activity by accumulated plastidic dimethylallyl diphosphate almost completely explained this reduction in carbon flux. Our data demonstrate that short-term biochemical feedback regulation of 1-deoxy-d-xylulose-5-phosphate synthase activity by plastidic dimethylallyl diphosphate is an important regulatory mechanism of the MEP pathway. Despite being relieved from the large carbon demand of isoprene biosynthesis, NE plants redirected only approximately 0.5% of this saved carbon toward essential nonvolatile isoprenoids, i.e. β-carotene and lutein, most probably to compensate for the absence of isoprene and its antioxidant properties.

Indexed as

ButadienesCarbonCarbon DioxideCarbon IsotopesDown-RegulationErythritolHemiterpenesIsotope LabelingLightMetabolic Flux AnalysisModels, BiologicalOrganophosphorus CompoundsPentanesPigments, BiologicalPlant LeavesPlastids2-C-methylerythritol 4-phosphate3,3-dimethylallyl pyrophosphateButadienesCarbonCarbon DioxideCarbon Isotopesdeoxyxylulose-5-phosphate synthaseErythritolHemiterpenesisopreneOrganophosphorus CompoundsPentanesPigments, BiologicalSugar PhosphatesTransferases

Identifiers

PMID24590857
PMCPMC4012595
OpenAlexW2111550864

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.