Evidence map›Paper›PMID 24590738›Full record

ArticleMolecular biology reports2014

Identification of a novel nonsynonymous mutation of EYA1 disrupting splice site in a Korean patient with BOR syndrome.

Hui Ram Kim, Mee Hyun Song, Min-A Kim, Ye-Ri Kim, Kyu-Yup Lee, Jong Kyung Sonn, Jaetae Lee, Jae Young Choi, Un-Kyung Kim

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In one paragraph

Article in Molecular biology reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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  5. AIntractable & rare diseases research · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hui Ram KimDepartment of Biology, College of Natural Sciences, Kyungpook National University, Daegu, 702-701, South Korea.
Mee Hyun Song
Min-A Kim
Ye-Ri Kim
Kyu-Yup Lee
Jong Kyung Sonn
Jaetae Lee
Jae Young Choi
Un-Kyung Kim
Kyungpook National University · KRCatholic Kwandong University · KRYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The EYA1 gene is known as the causative gene of BOR (Branchio-oto-renal) syndrome which is a genetic disorder associated with branchial cleft cysts of fistulae, hearing loss, ear malformation, and renal anomalies. Although approximately 40% of patients with BOR syndrome have mutations in the EYA1 gene and over 130 disease-causing mutations in EYA1 have been reported in various populations, only a few mutations have been reported in Korean families. In this study, genetic analysis of the EYA1 gene was performed in a Korean patient diagnosed with BOR syndrome and his parents. A de novo novel missense mutation, c.418G>A, located at the end of exon 6, changed glycine to serine at amino acid position 140 (p.G140S) and was suspected to affect normal splicing. Our in vitro splicing assay demonstrated that this mutation causes exon 6 skipping leading to frameshift and truncation of the protein to result in the loss of eyaHR. To the best of our knowledge, this is the first report revealing that a missense mutation in the exon disturbs normal splicing as a result of a substitution of the last nucleotide of an exon in EYA1.

Indexed as

ExonsMutation, MissenseRNA Splice SitesAmino Acid SubstitutionAsian PeopleBase SequenceBranchio-Oto-Renal SyndromeChild, PreschoolDNA Mutational AnalysisHumansIntracellular Signaling Peptides and ProteinsMaleMolecular Sequence DataNuclear ProteinsPedigreeProtein Tyrosine PhosphatasesEYA1 protein, humanIntracellular Signaling Peptides and ProteinsNuclear ProteinsProtein Tyrosine PhosphatasesRNA Splice Sites

Identifiers

PMID24590738
OpenAlexW2147283007

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.