Evidence map›Paper›PMID 24587036›Full record

ArticlePloS one2014

Insight into buffalo (Bubalus bubalis) RIG1 and MDA5 receptors: a comparative study on dsRNA recognition and in-vitro antiviral response.

Manvender Singh, Biswajit Brahma, Jitendra Maharana, Mahesh Chandra Patra, Sushil Kumar, Purusottam Mishra, Megha Saini, Bidhan Chandra De, Sourav Mahanty, Tirtha Kumar Datta and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Manvender SinghAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Biswajit BrahmaAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Jitendra MaharanaAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Mahesh Chandra PatraAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Sushil KumarAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Purusottam MishraAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Megha SainiAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Bidhan Chandra DeAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Sourav MahantyAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Tirtha Kumar DattaAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
Sachinandan DeAnimal Genomics Lab, Animal Biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India.
National Dairy Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RIG1 and MDA5 have emerged as important intracellular innate pattern recognition receptors that recognize viral RNA and mediate cellular signals controlling Type I interferon (IFN-I) response. Buffalo RIG1 and MDA5 genes were investigated to understand the mechanism of receptor induced antiviral response. Sequence analysis revealed that RIG1 and MDA5 maintain a domain arrangement that is common in mammals. Critical binding site residues of the receptors are evolutionary conserved among mammals. Molecular dynamics simulations suggested that RIG1 and MDA5 follow a similar, if not identical, dsRNA binding pattern that has been previously reported in human. Moreover, binding free energy calculation revealed that MDA5 had a greater affinity towards dsRNA compared to RIG1. Constitutive expressions of RLR genes were ubiquitous in different tissues without being specific to immune organs. Poly I:C stimulation induced elevated expressions of IFN-β and IFN-stimulated genes (ISGs) through interferon regulatory factors (IRFs) mediated pathway in buffalo foetal fibroblast cells. The present study provides crucial insights into the structure and function of RIG1 and MDA5 receptors in buffalo.

Indexed as

Amino Acid SequenceAnalysis of VarianceAnimalsBase SequenceBuffaloesDEAD-box RNA HelicasesDNA PrimersImmunohistochemistryInterferon Type IMolecular Dynamics SimulationMolecular Sequence DataPhylogenyPoly I-CReal-Time Polymerase Chain ReactionReceptors, Pattern RecognitionReceptors, Retinoic AcidDEAD-box RNA HelicasesDNA PrimersInterferon Type IPoly I-CReceptors, Pattern RecognitionReceptors, Retinoic AcidRNA, Double-StrandedRNA, Viral

Identifiers

PMID24587036
PMCPMC3935933
OpenAlexW2092432178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.