Evidence map›Paper›PMID 24586283›Full record

ArticlePloS one2014

Isolation and molecular characterization of a novel picornavirus from baitfish in the USA.

Nicholas B D Phelps, Sunil K Mor, Anibal G Armien, William Batts, Andrew E Goodwin, Lacey Hopper, Rebekah McCann, Terry Fei Fan Ng, Corey Puzach, Thomas B Waltzek and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. First report of Duck Hepatitis A virus genotype 2 in India.Veterinary research communications · 2023
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  4. Review
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  8. Article
  9. Review
  10. Review
  11. Article
  12. Novel picornavirus in domestic rabbits (Oryctolagus cuniculus var. domestica).Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016
    Article
  13. Article
  14. Article
  15. Article
  16. Deep sequencing: becoming a critical tool in clinical virology.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2014
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Nicholas B D PhelpsMinnesota Veterinary Diagnostic Laboratory, St. Paul, Minnesota, United States of America ; University of Minnesota, Department of Veterinary Population Medicine, St. Paul, Minnesota, United States of America.
Sunil K MorMinnesota Veterinary Diagnostic Laboratory, St. Paul, Minnesota, United States of America.
Anibal G ArmienMinnesota Veterinary Diagnostic Laboratory, St. Paul, Minnesota, United States of America ; University of Minnesota, Department of Veterinary Population Medicine, St. Paul, Minnesota, United States of America.
William BattsU.S. Geological Survey, Western Fisheries Research Center, Seattle, Washington, United States of America.
Andrew E GoodwinU.S. Fish and Wildlife Service, Portland, Oregon, United States of America.
Lacey HopperU.S. Fish and Wildlife Service, Bozeman Fish Health Center, Bozeman, Montana, United States of America.
Rebekah McCannU.S. Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, Wisconsin, United States of America.
Terry Fei Fan NgBlood Systems Research Institute, San Francisco, California, United States of America ; University of California, Department of Laboratory Medicine, San Francisco, California, United States of America.
Corey PuzachU.S. Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, Wisconsin, United States of America.
Thomas B WaltzekUniversity of Florida, College of Veterinary Medicine, Department of Infectious Diseases and Pathology, University of Florida, Gainesville, Florida, United States of America.
Eric DelwartBlood Systems Research Institute, San Francisco, California, United States of America ; University of California, Department of Laboratory Medicine, San Francisco, California, United States of America.
James WintonU.S. Geological Survey, Western Fisheries Research Center, Seattle, Washington, United States of America.
Sagar M GoyalMinnesota Veterinary Diagnostic Laboratory, St. Paul, Minnesota, United States of America ; University of Minnesota, Department of Veterinary Population Medicine, St. Paul, Minnesota, United States of America.
United States Fish and Wildlife Service · USUniversity of Minnesota · USWestern Fisheries Research CenterBlood Systems Research Institute · USFlorida College · USUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During both regulatory and routine surveillance sampling of baitfish from the states of Illinois, Minnesota, Montana, and Wisconsin, USA, isolates (n = 20) of a previously unknown picornavirus were obtained from kidney/spleen or entire viscera of fathead minnows (Pimephales promelas) and brassy minnows (Hybognathus hankinsoni). Following the appearance of a diffuse cytopathic effect, examination of cell culture supernatant by negative contrast electron microscopy revealed the presence of small, round virus particles (∼ 30-32 nm), with picornavirus-like morphology. Amplification and sequence analysis of viral RNA identified the agent as a novel member of the Picornaviridae family, tentatively named fathead minnow picornavirus (FHMPV). The full FHMPV genome consisted of 7834 nucleotides. Phylogenetic analysis based on 491 amino acid residues of the 3D gene showed 98.6% to 100% identity among the 20 isolates of FHMPV compared in this study while only 49.5% identity with its nearest neighbor, the bluegill picornavirus (BGPV) isolated from bluegill (Lepomis macrochirus). Based on complete polyprotein analysis, the FHMPV shared 58% (P1), 33% (P2) and 43% (P3) amino acid identities with BGPV and shared less than 40% amino acid identity with all other picornaviruses. Hence, we propose the creation of a new genus (Piscevirus) within the Picornaviridae family. The impact of FHMPV on the health of fish populations is unknown at present.

Indexed as

CyprinidaePhylogenyAmino Acid SequenceAnimalsBase SequenceDNA, ComplementaryDNA PrimersFish DiseasesGreat Lakes RegionMicroscopy, ElectronMolecular Sequence DataMontanaPicornaviridaePicornaviridae InfectionsRNA, ViralSequence Analysis, DNADNA, ComplementaryDNA PrimersRNA, Viral

Identifiers

PMID24586283
PMCPMC3931614
OpenAlexW2064830964

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.