Evidence map›Paper›PMID 24584244›Full record

ArticleApplied and environmental microbiology2014

Analysis of the microbial community structure by monitoring an Hg methylation gene (hgcA) in paddy soils along an Hg gradient.

Yu-Rong Liu, Ri-Qing Yu, Yuan-Ming Zheng, Ji-Zheng He

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 139 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Recent advance of microbial mercury methylation in the environment.Applied microbiology and biotechnology · 2024
    Review
  6. Article
  7. Expression Levels ofEnvironmental science & technology · 2022
    Article
  8. Article
  9. Recent advances in exploring the heavy metal(loid) resistant microbiome.Computational and structural biotechnology journal · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Frontiers in microbiology · 2020
    Article
  15. An ImprovedFrontiers in microbiology · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Vertical Distribution of Total Mercury and Mercury Methylation in a Landfill Site in Japan.International journal of environmental research and public health · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 3 countries.

Yu-Rong LiuState Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China.
Ri-Qing Yu
Yuan-Ming Zheng
Ji-Zheng He
Chinese Academy of Sciences · CNGeorgia Institute of Technology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Knowledge of the diversity of mercury (Hg)-methylating microbes in the environment is limited due to a lack of available molecular biomarkers. Here, we developed novel degenerate PCR primers for a key Hg-methylating gene (hgcA) and amplified successfully the targeted genes from 48 paddy soil samples along an Hg concentration gradient in the Wanshan Hg mining area of China. A significant positive correlation was observed between hgcA gene abundance and methylmercury (MeHg) concentrations, suggesting that microbes containing the genes contribute to Hg methylation in the sampled soils. Canonical correspondence analysis (CCA) showed that the hgcA gene diversity in microbial community structures from paddy soils was high and was influenced by the contents of total Hg, SO4(2-), NH4(+), and organic matter. Phylogenetic analysis showed that hgcA microbes in the sampled soils likely were related to Deltaproteobacteria, Firmicutes, Chloroflexi, Euryarchaeota, and two unclassified groups. This is a novel report of hgcA diversity in paddy habitats, and results here suggest a link between Hg-methylating microbes and MeHg contamination in situ, which would be useful for monitoring and mediating MeHg synthesis in soils.

Indexed as

Soil MicrobiologyBacteriaBacterial ProteinsBiodiversityChinaMercuryMethylationMolecular Sequence DataPhylogenySoilSoil PollutantsBacterial ProteinsMercurySoilSoil Pollutants

Identifiers

PMID24584244
PMCPMC3993304
OpenAlexW2011683542

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.