Evidence map›Paper›PMID 24584119›Full record

ArticleNature medicine2014

Multiplexed ion beam imaging of human breast tumors.

Michael Angelo, Sean C Bendall, Rachel Finck, Matthew B Hale, Chuck Hitzman, Alexander D Borowsky, Richard M Levenson, John B Lowe, Scot D Liu, Shuchun Zhao and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 681 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
681citing papers in PubMed, 1 pooled it
25.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

681 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,128 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Review
  5. Review
  6. Emerging technologies in the spatial proteomics landscape.Analytical and bioanalytical chemistry · 2026
    Review
  7. Review
  8. Article
  9. Article
  10. Review
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  18. Thousandfold Expansion Microscopy.bioRxiv : the preprint server for biology · 2026
    Article
  19. Article
  20. Article

621 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Michael Angelo1] Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA. [2] Department of Laboratory Medicine, University of California-San Francisco, San Francisco, California, USA.
Sean C BendallBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.
Rachel FinckBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.
Matthew B HaleBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.
Chuck HitzmanDepartment of Materials Science and Engineering, Stanford University, Stanford, California, USA.
Alexander D BorowskyDepartment of Pathology and Laboratory Medicine, University of California-Davis, Health System, Sacramento, California, USA.
Richard M LevensonDepartment of Pathology and Laboratory Medicine, University of California-Davis, Health System, Sacramento, California, USA.
John B LoweDepartment of Pathology, Genentech, South San Francisco, California, USA.
Scot D LiuDepartment of Pathology, Genentech, South San Francisco, California, USA.
Shuchun ZhaoDepartment of Pathology, Stanford University, Stanford, California, USA.
Yasodha NatkunamDepartment of Pathology, Stanford University, Stanford, California, USA.
Garry P NolanBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.
Stanford University · USBaxter (United States) · USUniversity of California, Davis · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura Marcu · 2002 to 2026
$84.9M
Systems Biology CoreU19AI100627 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ULEVITCH, RICHARD J · 2012 to 2021
$49.1M
Stanford Nanocharacterization LaboratoryU54CA119367 · NCI · STANFORD UNIVERSITY · PI GAMBHIR, SANJIV S · 2006 to 2010
$19.8M
TRIGGERING CELL DEATH IN B CELL LYMPHOMAP01CA034233 · NCI · STANFORD UNIVERSITY · PI FELSHER, DEAN W · 1985 to 2010
$19.5M
Small Animal ImagingP50CA114747 · NCI · STANFORD UNIVERSITY · PI RAO, JIANGHONG · 2005 to 2014
$18.2M
TRANS-NETWORK PROJECTSU54CA143907 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI NOLAN, GARRY P · 2009 to 2013
$15.2M
MODELING THE ROLE OF PROGRESSION IN FOLLICULAR LYMPHOMAU54CA149145 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2010 to 2014
$12.1M
The Center for Systemic Control of Cyto-NetworksPN2EY018228 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HO, CHIH-MING · 2006 to 2010
$8.2M
Software & Hardware Inference Engines for Automated Determination of Primary CellR01CA130826 · NCI · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2008 to 2011
$6.7M
THE ROLE OF TNF-ALPHA IN LYMPHOCYTE DEVELOPMENT IN NOD MICEP01AI036535 · NIAID · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 1994 to 2008
$6.6M
Stanford Molecular Imaging Scholars - SMISR25CA118681 · NCI · STANFORD UNIVERSITY · PI LEVIN, CRAIG S · 2006 to 2015
$5.0M
NCI NIH HHS 1R01CA130826NCI NIH HHS 5R25CA11868107NCI NIH HHS 5U54CA143907NCI NIH HHS P01 CA034233NCI NIH HHS P01 CA034233-22A1NCI NIH HHS P30 CA093373NCI NIH HHS P50 CA114747NCI NIH HHS R01 CA120525NCI NIH HHS R01 CA130826NCI NIH HHS R25 CA118681NCI NIH HHS RFA CA 09-009NCI NIH HHS RFA CA 09-011NCI NIH HHS U54 CA119367NCI NIH HHS U54 CA143907NCI NIH HHS U54 CA149145NCI NIH HHS U54CA149145NCRR NIH HHS S10 RR027431NCRR NIH HHS S10 RR027582NEI NIH HHS PN2 EY018228NEI NIH HHS PN2EY018228NHLBI NIH HHS HHSN268201000034CNHLBI NIH HHS N01-HV-00242NHLBI NIH HHS N01 HV028183NIAID NIH HHS HHSN272200700038CNIAID NIH HHS P01 AI036535NIAID NIH HHS R01 AI035304NIAID NIH HHS R01 AI073724NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI100627NIDDK NIH HHS R21 DK073928NIGMS NIH HHS 1K99 GM104148-01NIGMS NIH HHS K99 GM104148NIGMS NIH HHS R00 GM104148NIH HHS S10 OD016318
6 · The paper itself

Abstract

Immunohistochemistry (IHC) is a tool for visualizing protein expression that is employed as part of the diagnostic workup for the majority of solid tissue malignancies. Existing IHC methods use antibodies tagged with fluorophores or enzyme reporters that generate colored pigments. Because these reporters exhibit spectral and spatial overlap when used simultaneously, multiplexed IHC is not routinely used in clinical settings. We have developed a method that uses secondary ion mass spectrometry to image antibodies tagged with isotopically pure elemental metal reporters. Multiplexed ion beam imaging (MIBI) is capable of analyzing up to 100 targets simultaneously over a five-log dynamic range. Here, we used MIBI to analyze formalin-fixed, paraffin-embedded human breast tumor tissue sections stained with ten labels simultaneously. The resulting data suggest that MIBI can provide new insights into disease pathogenesis that will be valuable for basic research, drug discovery and clinical diagnostics.

Indexed as

Biomarkers, TumorBreast NeoplasmsErb-b2 Receptor Tyrosine KinasesEstrogen Receptor alphaFemaleHumansImmunohistochemistryMass SpectrometryReceptors, ProgesteroneBiomarkers, TumorErb-b2 Receptor Tyrosine KinasesESR1 protein, humanEstrogen Receptor alphaReceptors, Progesterone

Identifiers

PMID24584119
PMCPMC4110905
OpenAlexW2043565262

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.