Evidence map›Paper›PMID 24584088›Full record

ArticleNature immunology2014

Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses.

Janilyn Arsenio, Boyko Kakaradov, Patrick J Metz, Stephanie H Kim, Gene W Yeo, John T Chang

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 117 papers.

0numbers the graph read from it
0cells of the map it votes in
117citing papers in PubMed
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

117 citing papers in PubMed, 205 citations in OpenAlex.

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57 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Janilyn Arsenio *Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Boyko Kakaradov *Department of Cellular and Molecular Medicine, UCSD Stem Cell and Bioinformatics Programs, and Institute for Genomic Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Patrick J MetzDepartment of Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Stephanie H KimDepartment of Medicine, University of California San Diego, La Jolla, CA 92093, USA.
Gene W YeoDepartment of Cellular and Molecular Medicine, UCSD Stem Cell and Bioinformatics Programs, and Institute for Genomic Medicine, University of California San Diego, La Jolla, CA 92093, USA.
John T ChangDepartment of Medicine, University of California San Diego, La Jolla, CA 92093, USA.
University of California, San Diego · USNational University of Singapore · SG

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
Training Grant in GastroenterologyT32DK007202 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA · 1985 to 2022
$7.7M
Defining the messenger RNP code in the brainR01NS075449 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI YEO, EUGENE WEI-MING · 2012 to 2016
$3.0M
The UCSD Digestive Diseases Research Development CenterR24DK080506 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ECKMANN, LARS · 2008 to 2012
$2.7M
Regulation and Function of Polarity and Asymmetric Cell Division in ImmunityR01AI095277 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHANG, JOHN T · 2012 to 2016
$2.6M
Understanding the Basis for Cellular Diversity During Adaptive ImmunityDP2OD008469 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHANG, JOHN T · 2011 to 2011
$2.3M
Asymmetric T cell division initiating adaptive immunity and colitisK08DK080949 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI CHANG, JOHN T · 2008 to 2012
$723k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA023100NHGRI NIH HHS HG004659NHGRI NIH HHS R01 HG004659NIAID NIH HHS AI095277NIAID NIH HHS R01 AI095277NIDDK NIH HHS DK080949NIDDK NIH HHS DK80506NIDDK NIH HHS K08 DK080949NIDDK NIH HHS R24 DK080506NIDDK NIH HHS T32 DK007202NIH HHS DP2 OD008469NIH HHS OD008469NINDS NIH HHS NS075449NINDS NIH HHS R01 NS075449
6 · The paper itself

Abstract

T lymphocytes responding to microbial infection give rise to effector cells that mediate acute host defense and memory cells that provide long-lived immunity, but the fundamental question of when and how these cells arise remains unresolved. Here we combined single-cell gene-expression analyses with 'machine-learning' approaches to trace the transcriptional 'roadmap' of individual CD8(+) T lymphocytes throughout the course of an immune response in vivo. Gene-expression signatures predictive of eventual fates could be discerned as early as the first T lymphocyte division and may have been influenced by asymmetric partitioning of the receptor for interleukin 2 (IL-2Rα) during mitosis. Our findings emphasize the importance of single-cell analyses in understanding fate determination and provide new insights into the specification of divergent lymphocyte fates early during an immune response to microbial infection.

Indexed as

Adaptive ImmunityAdoptive TransferAnimalsCD8-Positive T-LymphocytesCell DifferentiationCell LineageComputer SimulationGene Expression ProfilingInfectionsListeria monocytogenesLymphocyte ActivationMiceMice, Inbred C57BLMice, TransgenicMitosisOvalbuminOvalbuminReceptors, Interleukin-2

Identifiers

PMID24584088
PMCPMC3968536
OpenAlexW2128433513

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.