Evidence map›Paper›PMID 24584084›Full record

ReviewCurrent opinion in genetics & development2014

Collection, integration and analysis of cancer genomic profiles: from data to insight.

Jianjiong Gao, Giovanni Ciriello, Chris Sander, Nikolaus Schultz

Abstract readReview
In one paragraph

Review in Current opinion in genetics & development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  3. Review
  4. Review
  5. Article
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jianjiong GaoComputational Biology Center, Memorial Sloan-Kettering Cancer Center, Box 460, New York, NY 10065, USA.
Giovanni CirielloComputational Biology Center, Memorial Sloan-Kettering Cancer Center, Box 460, New York, NY 10065, USA.
Chris SanderComputational Biology Center, Memorial Sloan-Kettering Cancer Center, Box 460, New York, NY 10065, USA.
Nikolaus SchultzComputational Biology Center, Memorial Sloan-Kettering Cancer Center, Box 460, New York, NY 10065, USA. Electronic address: schultz@cbio.mskcc.org.

Funding

TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
MSKCC Center for Translational Cancer Genomic AnalysisU24CA143840 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI LADANYI, MARC, SANDER, CHRIS · 2009 to 2016
$11.5M
NCI NIH HHS U24 CA143840NCI NIH HHS U24CA143840NIGMS NIH HHS GM103504NIGMS NIH HHS P41 GM103504
6 · The paper itself

Abstract

The recent deluge of cancer genomics data provides a tremendous opportunity for the discovery of detailed mechanisms of tumorigenesis and the development of therapeutics. However, identifying the functionally relevant genomic alterations ('drivers') among the many non-oncogenic events ('passengers') presents a major challenge. Several new methods have been developed over the past few years that identify recurrently altered genes. Mapping the recurrent genomic alterations, such as somatic mutations and focal DNA copy-number alterations, onto individual tumor samples as tumor-specific event calls facilitates the identification of altered processes and pathways. The resulting reduction in complexity makes cancer genomics data more easily interpretable by cancer researchers and is now driving the development of powerful yet intuitive web-based analysis tools.

Indexed as

Genome, HumanGenomicsDNA Copy Number VariationsHumansMutationNeoplasmsRecurrence

Identifiers

PMID24584084
PMCPMC4084973

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.