Evidence map›Paper›PMID 24582512›Full record

ArticleTicks and tick-borne diseases2014

Comparative bioinformatics, temporal and spatial expression analyses of Ixodes scapularis organic anion transporting polypeptides.

Zeljko Radulović, Lindsay M Porter, Tae K Kim, Albert Mulenga

Open access · greenAbstract readComparative Study
In one paragraph

Article in Ticks and tick-borne diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  3. Frontiers in cellular and infection microbiology · 2023
    Article
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Zeljko RadulovićTexas A & M University AgriLife Research, Department of Entomology, 2475 TAMU, College Station, TX 77843, USA.
Lindsay M PorterTexas A & M University AgriLife Research, Department of Entomology, 2475 TAMU, College Station, TX 77843, USA.
Tae K KimTexas A & M University AgriLife Research, Department of Entomology, 2475 TAMU, College Station, TX 77843, USA.
Albert MulengaTexas A & M University AgriLife Research, Department of Entomology, 2475 TAMU, College Station, TX 77843, USA. Electronic address: amulenga@ag.tamu.edu.
Texas A&M University · US

Funding

Tick feeding regulation by orthologous tick saliva serine protease inhibitorsR01AI093858 · NIAID · TEXAS A&M UNIVERSITY · PI MULENGA, ALBERT · 2011 to 2014
$1.0M
Molecular Mechanisms Regulating Early Stage Tick FeedingR21AI081093 · NIAID · TEXAS A&M UNIVERSITY · PI MULENGA, ALBERT · 2011 to 2012
$404k
NIAID NIH HHS AI081093NIAID NIH HHS AI1AI093858NIAID NIH HHS R01 AI093858NIAID NIH HHS R21 AI081093
6 · The paper itself

Abstract

Organic anion-transporting polypeptides (Oatps) are an integral part of the detoxification mechanism in vertebrates and invertebrates. These cell surface proteins are involved in mediating the sodium-independent uptake and/or distribution of a broad array of organic amphipathic compounds and xenobiotic drugs. This study describes bioinformatics and biological characterization of 9 Oatp sequences in the Ixodes scapularis genome. These sequences have been annotated on the basis of 12 transmembrane domains, consensus motif D-X-RW-(I,V)-GAWW-X-G-(F,L)-L, and 11 conserved cysteine amino acid residues in the large extracellular loop 5 that characterize the Oatp superfamily. Ixodes scapularis Oatps may regulate non-redundant cross-tick species conserved functions in that they did not cluster as a monolithic group on the phylogeny tree and that they have orthologs in other ticks. Phylogeny clustering patterns also suggest that some tick Oatp sequences transport substrates that are similar to those of body louse, mosquito, eye worm, and filarial worm Oatps. Semi-quantitative RT-PCR analysis demonstrated that all 9 I. scapularis Oatp sequences were expressed during tick feeding. Ixodes scapularis Oatp genes potentially regulate functions during early and/or late-stage tick feeding as revealed by normalized mRNA profiles. Normalized transcript abundance indicates that I. scapularis Oatp genes are strongly expressed in unfed ticks during the first 24h of feeding and/or at the end of the tick feeding process. Except for 2 I. scapularis Oatps, which were expressed in the salivary glands and ovaries, all other genes were expressed in all tested organs, suggesting the significance of I. scapularis Oatps in maintaining tick homeostasis. Different I. scapularis Oatp mRNA expression patterns were detected and discussed with reference to different physiological states of unfed and feeding ticks.

Indexed as

Computational BiologyGene Expression RegulationAmino Acid SequenceAnimalsBase SequenceDNAFeeding BehaviorFemaleGenomeIxodesMaleMolecular Sequence DataMultigene FamilyOrganic Anion TransportersOrgan SpecificityPhylogenyDNAOrganic Anion TransportersExpression analysesIxodes scapularisOrganic anion transporting polypeptides

Identifiers

PMID24582512
PMCPMC4432481
OpenAlexW2076437142

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.