Evidence map›Paper›PMID 24582435›Full record

ArticleStructure (London, England : 1993)2014

(19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.

James M Aramini, Keith Hamilton, Li-Chung Ma, G V T Swapna, Paul G Leonard, John E Ladbury, Robert M Krug, Gaetano T Montelione

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 61 citations in OpenAlex.

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  11. Assessing the applicability ofJournal of biomolecular NMR · 2023
    Article
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  14. Review
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  17. The intracellular environment affects protein-protein interactions.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Beilstein journal of organic chemistry · 2021
    Review
  19. A suite ofJournal of biomolecular NMR · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

James M Aramini *Center for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, and Northeast Structural Genomics Consortium, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, U.S.A.
Keith Hamilton *Center for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, and Northeast Structural Genomics Consortium, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, U.S.A.
Li-Chung MaCenter for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, and Northeast Structural Genomics Consortium, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, U.S.A.
G V T SwapnaCenter for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, and Northeast Structural Genomics Consortium, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, U.S.A.
Paul G LeonardDepartment of Biochemistry and Molecular Biology and Center for Biomolecular Structure and Function, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, U.S.A.
John E LadburyDepartment of Biochemistry and Molecular Biology and Center for Biomolecular Structure and Function, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, U.S.A.
Robert M KrugInstitute for Cellular and Molecular Biology, Department of Molecular Biosciences, Center for Infectious Disease, University of Texas, Austin, Texas 78712, U.S.A.
Gaetano T MontelioneCenter for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, and Northeast Structural Genomics Consortium, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, U.S.A.
Rutgers, The State University of New Jersey · USThe University of Texas MD Anderson Cancer Center · US

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI MONTELIONE, GAETANO T · 2010 to 2014
$36.9M
REPLICATION OF INFLUENZA VIRUSR01AI011772 · NIAID · UNIVERSITY OF TEXAS AUSTIN · PI KRUG, ROBERT M · 1985 to 2017
$10.7M
Targeting the NS1 Protein for the Development of Influenza Virus AntiviralsU01AI074497 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI KRUG, ROBERT M · 2007 to 2011
$4.9M
NIAID NIH HHS R01 AI011772NIAID NIH HHS R01 AI11772NIAID NIH HHS U01 AI074497NIGMS NIH HHS U54 GM094597NIGMS NIH HHS U54-GM094597
6 · The paper itself

Abstract

Nonstructural protein 1 of influenza A virus (NS1A) is a conserved virulence factor comprised of an N-terminal double-stranded RNA (dsRNA)-binding domain and a multifunctional C-terminal effector domain (ED), each of which can independently form symmetric homodimers. Here we apply (19)F NMR to NS1A from influenza A/Udorn/307/1972 virus (H3N2) labeled with 5-fluorotryptophan, and we demonstrate that the (19)F signal of Trp187 is a sensitive, direct monitor of the ED helix:helix dimer interface. (19)F relaxation dispersion data reveal the presence of conformational dynamics within this functionally important protein:protein interface, whose rate is more than three orders of magnitude faster than the kinetics of ED dimerization. (19)F NMR also affords direct spectroscopic evidence that Trp187, which mediates intermolecular ED:ED interactions required for cooperative dsRNA binding, is solvent exposed in full-length NS1A at concentrations below aggregation. These results have important implications for the diverse roles of this NS1A epitope during influenza virus infection.

Indexed as

Molecular Dynamics SimulationEscherichia coliFluorine-19 Magnetic Resonance ImagingGene ExpressionInfluenza A Virus, H3N2 SubtypeNuclear Magnetic Resonance, BiomolecularProtein BindingProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsRNA, Double-StrandedTryptophanViral Nonstructural Proteins5-fluorotryptophanRecombinant ProteinsRNA, Double-StrandedTryptophanViral Nonstructural Proteins

Identifiers

PMID24582435
PMCPMC4110948
OpenAlexW1997358511

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.