Evidence map›Paper›PMID 24578576›Full record

ArticleScience (New York, N.Y.)2014

Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma.

Joshua N Honeyman, Elana P Simon, Nicolas Robine, Rachel Chiaroni-Clarke, David G Darcy, Irene Isabel P Lim, Caroline E Gleason, Jennifer M Murphy, Brad R Rosenberg, Lydia Teegan and 9 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 297 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
297citing papers in PubMed, 2 pooled it
14.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

297 citing papers in PubMed, 2 syntheses or guidelines pooled it, 485 citations in OpenAlex.

  1. SEOM-GEMCAD-TTD clinical guidelines for the management of hepatocarcinoma patients (2023).Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Guideline
  2. Treatment and Prognosis of Fibrolamellar Hepatocellular Carcinoma: a Systematic Review of the Recent Literature and Meta-analysis.Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract · 2023
    Pooled it
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  11. A PKA-selective inhibitor captures an open but more ordered conformation of the PKA catalytic subunit.Proceedings of the National Academy of Sciences of the United States of America · 2026
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237 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 1 institution in 1 country.

Joshua N HoneymanLaboratory of Cellular Biophysics, Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.
Elana P Simon
Nicolas Robine
Rachel Chiaroni-Clarke
David G Darcy
Irene Isabel P Lim
Caroline E Gleason
Jennifer M Murphy
Brad R Rosenberg
Lydia Teegan
Constantin N Takacs
Sergio Botero
Rachel Belote
Soren Germer
Anne-Katrin Emde
Vladimir Vacic
Umesh Bhanot
Michael P LaQuaglia
Sanford M Simon
New York Genome Center · US

Funding

TRANSFORMING TRANSLATIONAL SCIENCE AND EDUCATION TO BENEFIT HUMAN HEALTHUL1RR024143 · NCRR · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY · 2006 to 2011
$49.1M
Transforming Translational Science and Education to Benefit Human HealthUL1TR000043 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY · 2012 to 2015
$26.8M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR000043NCRR NIH HHS 2UL1RR024143NCRR NIH HHS UL1 RR024143
6 · The paper itself

Abstract

Fibrolamellar hepatocellular carcinoma (FL-HCC) is a rare liver tumor affecting adolescents and young adults with no history of primary liver disease or cirrhosis. We identified a chimeric transcript that is expressed in FL-HCC but not in adjacent normal liver and that arises as the result of a ~400-kilobase deletion on chromosome 19. The chimeric RNA is predicted to code for a protein containing the amino-terminal domain of DNAJB1, a homolog of the molecular chaperone DNAJ, fused in frame with PRKACA, the catalytic domain of protein kinase A. Immunoprecipitation and Western blot analyses confirmed that the chimeric protein is expressed in tumor tissue, and a cell culture assay indicated that it retains kinase activity. Evidence supporting the presence of the DNAJB1-PRKACA chimeric transcript in 100% of the FL-HCCs examined (15/15) suggests that this genetic alteration contributes to tumor pathogenesis.

Indexed as

Carcinoma, HepatocellularChromosome DeletionChromosomes, Human, Pair 19Cyclic AMP-Dependent Protein Kinase Catalytic SubunitsGene Expression Regulation, NeoplasticHSP40 Heat-Shock ProteinsHumansLiver NeoplasmsOncogene Proteins, FusionProtein MultimerizationProtein Structure, TertiaryTranscription, GeneticTumor Cells, CulturedCyclic AMP-Dependent Protein Kinase Catalytic SubunitsDNAJB1 protein, humanHSP40 Heat-Shock ProteinsOncogene Proteins, FusionPRKACA protein, human

Identifiers

PMID24578576
PMCPMC4286414
OpenAlexW1974489853

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.