Evidence map›Paper›PMID 24577613›Full record

ArticleCurrent microbiology2014

Transcriptional regulation mechanism of ter operon by OxyR in Yersinia pestis.

Bin Ni, Yiquan Zhang, Xinxiang Huang, Ruifu Yang, Dongsheng Zhou

Abstract read
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In one paragraph

Article in Current microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. The Klebsiella pneumoniaeInfection and immunity · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Bin NiSchool of Medical Science and Laboratory Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, China, nibinbb@aliyun.com.
Yiquan Zhang
Xinxiang Huang
Ruifu Yang
Dongsheng Zhou
Institute of Microbiology · CNJiangsu University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of this work was to study the transcriptional regulation mechanism of ter operon by OxyR in Yersinia pestis. Total RNAs were extracted from the wild-type (WT) strain and the oxyR null mutant (ΔoxyR) strain. Primer extension assay was employed to detect the promoter activity (the amount of primer extension product) of terZ in WT and ΔoxyR. terZ promoter-proximal region was cloned into the pRW50 plasmid containing a promoterless lacZ gene. The recombinant LacZ reporter plasmid was transformed into WT and ΔoxyR, respectively, to measure the promoter activity (the β-galactosidase activity) of terZ in WT and ΔoxyR by using the β-galactosidase enzyme assay system. The entire promoter-proximal region of the terZ gene was amplified by PCR from Y. pestis strain 201, and the over-expressed His-OxyR was also purified under native conditions with nickel loaded HiTrap Chelating Sepharose columns (Amersham). Electrophoretic mobility shift assay was applied to analyze the DNA-binding activity of His-OxyR to terZ promoter region in vitro. Primer extension assay detected only one transcriptional start site located at 50 bp upstream of terZ, whose transcript was directly activated by OxyR in Y. pestis. The EMSA result shows that His-OxyR has the ability to bind to the upstream DNA region of terZ. The transcription of ter operon was found to be directly activated by OxyR in Y. pestis.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsDNA-Binding ProteinsElectrophoretic Mobility Shift AssayGene Expression RegulationGenes, ReporterOperonPlasmidsPromoter Regions, GeneticRecombinant Fusion ProteinsTranscription FactorsTranscription Initiation SiteYersinia pestisBacterial ProteinsDNA-Binding ProteinsRecombinant Fusion ProteinsTranscription Factors

Identifiers

PMID24577613
OpenAlexW1976583995

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.