ArticleBioMed research international2014
Microsatellites in the genome of the edible mushroom, Volvariella volvacea.
Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 33 citations in OpenAlex.
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- Genome-wide characterization of microsatellite DNA in fishes: survey and analysis of their abundance and frequency in genome-specific regions.BMC genomics · 2021Article
- Comparison of the Microsatellite Distribution Patterns in the Genomes of Euarchontoglires at the Taxonomic Level.Frontiers in genetics · 2021Article
- Analysis of the Genome Sequence of Strain GiC-126 ofMycobiology · 2021Article
- Genome-wide characterization of simple sequence repeats in Palmae genomes.Genes & genomics · 2020Article
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- Distinguishing Homokaryons and Heterokaryons in Medicinal Polypore MushroomFrontiers in microbiology · 2020Article
- Three complete mitochondrial genomes of straw-rotting edible fungusMitochondrial DNA. Part B, Resources · 2018Article
- Genome-Wide Characterization and Expression Analyses ofInternational journal of molecular sciences · 2018Article
- The Landscape of Repetitive Elements in the Refined Genome of Chilli Anthracnose FungusFrontiers in microbiology · 2018Article
- Development of Novel Polymorphic EST-SSR Markers in Bailinggu (Pleurotus tuoliensis) for Crossbreeding.Genes · 2017Article
- Genome-wide mining and comparative analysis of microsatellites in three macaque species.Molecular genetics and genomics : MGG · 2017Article
- Genome microsatellite diversity within the Apicomplexa phylum.Molecular genetics and genomics : MGG · 2016Article
- Identification of Resistance to Wet Bubble Disease and Genetic Diversity in Wild and Cultivated Strains of Agaricus bisporus.International journal of molecular sciences · 2016Article
- Effects of Sublethal Fungicides on Mutation Rates and Genomic Variation in Fungal Plant Pathogen, Sclerotinia sclerotiorum.PloS one · 2016Article
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- The Genetic Structure of Phellinus noxius and Dissemination Pattern of Brown Root Rot Disease in Taiwan.PloS one · 2015Article
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Using bioinformatics software and database, we have characterized the microsatellite pattern in the V. volvacea genome and compared it with microsatellite patterns found in the genomes of four other edible fungi: Coprinopsis cinerea, Schizophyllum commune, Agaricus bisporus, and Pleurotus ostreatus. A total of 1346 microsatellites have been identified, with mono-nucleotides being the most frequent motif. The relative abundance of microsatellites was lower in coding regions with 21 No./Mb. However, the microsatellites in the V. volvacea gene models showed a greater tendency to be located in the CDS regions. There was also a higher preponderance of trinucleotide repeats, especially in the kinase genes, which implied a possible role in phenotypic variation. Among the five fungal genomes, microsatellite abundance appeared to be unrelated to genome size. Furthermore, the short motifs (mono- to tri-nucleotides) outnumbered other categories although these differed in proportion. Data analysis indicated a possible relationship between the most frequent microsatellite types and the genetic distance between the five fungal genomes.
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