Evidence map›Paper›PMID 24574333›Full record

ArticleArthritis & rheumatology (Hoboken, N.J.)2014

Epigenome-wide scan identifies a treatment-responsive pattern of altered DNA methylation among cytoskeletal remodeling genes in monocytes and CD4+ T cells from patients with Behçet's disease.

Travis Hughes, Filiz Ture-Ozdemir, Fatma Alibaz-Oner, Patrick Coit, Haner Direskeneli, Amr H Sawalha

Open access · greenAbstract read
In one paragraph

Article in Arthritis & rheumatology (Hoboken, N.J.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 78 citations in OpenAlex.

  1. Pooled it
  2. Different Methylation of CpG-SNPs in Behcet's Disease.BioMed research international · 2019
    Trial
  3. Review
  4. Article
  5. Review
  6. Behçet's syndrome: recent advances to aid diagnosis.Clinical and experimental medicine · 2023
    Review
  7. Article
  8. Immunopathogenesis of Behçet's disease.Clinical immunology (Orlando, Fla.) · 2023
    Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Uveitis in Children and Adolescents.Rheumatic diseases clinics of North America · 2021
    Review
  14. Behçet syndrome.Nature reviews. Disease primers · 2021
    Review
  15. Epigenetic Modifications and Therapy in Uveitis.Frontiers in cell and developmental biology · 2021
    Review
  16. Review
  17. Review
  18. Article
  19. Update on the Genetics of Autoinflammatory Disorders.Current allergy and asthma reports · 2019
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Travis HughesUniversity of Michigan, Ann Arbor.
Filiz Ture-Ozdemir
Fatma Alibaz-Oner
Patrick Coit
Haner Direskeneli
Amr H Sawalha
Marmara University · TRUniversity of Michigan–Ann Arbor · US

Funding

Strategic Vision & Impact on Environmental HealthP30ES017885 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Dana Dolinoy · 2011 to 2026
$21.3M
NIEHS NIH HHS P30 ES017885
6 · The paper itself

Abstract

objectiveThe pathogenesis of Behçet's disease (BD), an inflammatory disease with multisystem involvement, remains poorly understood. This study was undertaken to investigate whether there are DNA methylation abnormalities in BD that might contribute to the pathogenesis of the disease.

methodsWe examined genome-wide DNA methylation patterns in monocytes and CD4+ T cells from 16 male patients with untreated BD and age, sex, and ethnicity-matched healthy controls. Additional samples were collected from 12 of the same BD patients after treatment and achievement of disease remission. Genome-wide DNA methylation patterns were assessed using the Infinium HumanMethylation450 BeadChip array, which includes >485,000 individual methylation sites across the genome.

resultsWe identified 383 CpG sites in monocytes, and 125 in CD4+ T cells, that were differentially methylated between BD patients and controls. Bioinformatic analysis revealed a pattern of aberrant DNA methylation among genes that regulate cytoskeletal dynamics, suggesting that aberrant DNA methylation of multiple classes of structural and regulatory proteins of the cytoskeleton might contribute to the pathogenesis of BD. Further, treatment of BD modified the differences in DNA methylation observed in patients compared to controls; indeed, among CpG sites that were differentially methylated after disease remission versus before treatment, there was widespread reversal of the direction of aberrant DNA methylation observed between the patient and control groups.

conclusionThe results of this epigenome-wide study-the first such study in BD-provide strong evidence that epigenetic modification of cytoskeletal dynamics underlies the pathogenesis of BD and its response to treatment.

Indexed as

EpigenomicsGenome-Wide Association StudyActinsAdultAzathioprineBehcet SyndromeCase-Control StudiesCD4-Positive T-LymphocytesColchicineComputational BiologyCpG IslandsCytoskeletonDNA MethylationHumansMaleMonocytesActinsAzathioprineColchicineMyosinsTubulin Modulators

Identifiers

PMID24574333
PMCPMC4096298
OpenAlexW1871499212

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.