Evidence map›Paper›PMID 24573854›Full record

ArticleProceedings. Biological sciences2014

Genotyping of ancient Mycobacterium tuberculosis strains reveals historic genetic diversity.

Romy Müller, Charlotte A Roberts, Terence A Brown

Open access · hybridAbstract read
In one paragraph

Article in Proceedings. Biological sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Fostering Responsible Research on Ancient DNA.American journal of human genetics · 2020
    Review
  6. Article
  7. Article
  8. Molecular studies on ancient M. tuberculosis and M. leprae: methods of pathogen and host DNA analysis.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2015
    Review
  9. Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Romy MüllerManchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, , 131 Princess Street, Manchester M1 7DN, UK, Department of Archaeology, Durham University, , South Road, Durham DH1 3LE, UK.
Charlotte A Roberts
Terence A Brown
University of Manchester · GBDurham University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The evolutionary history of the Mycobacterium tuberculosis complex (MTBC) has previously been studied by analysis of sequence diversity in extant strains, but not addressed by direct examination of strain genotypes in archaeological remains. Here, we use ancient DNA sequencing to type 11 single nucleotide polymorphisms and two large sequence polymorphisms in the MTBC strains present in 10 archaeological samples from skeletons from Britain and Europe dating to the second-nineteenth centuries AD. The results enable us to assign the strains to groupings and lineages recognized in the extant MTBC. We show that at least during the eighteenth-nineteenth centuries AD, strains of M. tuberculosis belonging to different genetic groups were present in Britain at the same time, possibly even at a single location, and we present evidence for a mixed infection in at least one individual. Our study shows that ancient DNA typing applied to multiple samples can provide sufficiently detailed information to contribute to both archaeological and evolutionary knowledge of the history of tuberculosis.

Indexed as

Evolution, MolecularBase SequenceBone and BonesCluster AnalysisEuropeGenetic VariationGenotypeHumansMolecular Sequence DataMycobacterium tuberculosisPhylogenyPolymorphism, GeneticSequence Analysis, DNASpecies Specificityancient DNAmixed infectionsingle nucleotide polymorphismsstrain typingtuberculosis

Identifiers

PMID24573854
PMCPMC3953847
OpenAlexW2118150303

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.