Evidence map›Paper›PMID 24573685›Full record

ArticleThe Journal of biological chemistry2014

Sensor domain of histidine kinase KinB of Pseudomonas: a helix-swapped dimer.

Kemin Tan, Gekleng Chhor, T Andrew Binkowski, Robert P Jedrzejczak, Magdalena Makowska-Grzyska, Andrzej Joachimiak

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.Acta crystallographica. Section F, Structural biology communications · 2023
    Article
  4. Review
  5. Sensor Domain of Histidine Kinase VxrA ofJournal of bacteriology · 2021
    Article
  6. Review
  7. Article
  8. Sensory domain contraction in histidine kinase CitA triggers transmembrane signaling in the membrane-bound sensor.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kemin TanFrom the Midwest Center for Structural Genomics and.
Gekleng Chhor
T Andrew Binkowski
Robert P Jedrzejczak
Magdalena Makowska-Grzyska
Andrzej Joachimiak
Argonne National Laboratory · USUniversity of Chicago · US

Funding

The Midwest Center for Structural GenomicsU54GM074942 · NIGMS · UNIVERSITY OF CHICAGO · PI ORENGO, CHRISTINE · 2005 to 2009
$51.0M
Midwest Center for Structural GenomicsU54GM094585 · NIGMS · UNIVERSITY OF CHICAGO · PI MINOR, WLADEK · 2010 to 2014
$33.7M
NIAID NIH HHS HHSN272200700058CNIAID NIH HHS HHSN272201200026CNIGMS NIH HHS GM074942NIGMS NIH HHS GM094585NIGMS NIH HHS U54 GM074942NIGMS NIH HHS U54 GM094585
6 · The paper itself

Abstract

The overproduction of polysaccharide alginate is responsible for the formation of mucus in the lungs of cystic fibrosis patients. Histidine kinase KinB of the KinB-AlgB two-component system in Pseudomonas aeruginosa acts as a negative regulator of alginate biosynthesis. The modular architecture of KinB is similar to other histidine kinases. However, its periplasmic signal sensor domain is unique and is found only in the Pseudomonas genus. Here, we present the first crystal structures of the KinB sensor domain. The domain is a dimer in solution, and in the crystal it shows an atypical dimer of a helix-swapped four-helix bundle. A positively charged cavity is formed on the dimer interface and involves several strictly conserved residues, including Arg-60. A phosphate anion is bound asymmetrically in one of the structures. In silico docking identified several monophosphorylated sugars, including β-D-fructose 6-phosphate and β-D-mannose 6-phosphate, a precursor and an intermediate of alginate synthesis, respectively, as potential KinB ligands. Ligand binding was confirmed experimentally. Conformational transition from a symmetric to an asymmetric structure and decreasing dimer stability caused by ligand binding may be a part of the signal transduction mechanism of the KinB-AlgB two-component system.

Indexed as

AlginatesAmino Acid SequenceBacterial ProteinsBinding SitesCircular DichroismCrystallography, X-RayDNA-Binding ProteinsFructosephosphatesGlucuronic AcidHexuronic AcidsHistidine KinaseLigandsMannosephosphatesModels, MolecularMolecular Sequence DataProtein BindingAlgB protein, PseudomonasAlginatesBacterial ProteinsDNA-Binding Proteinsfructose-6-phosphateFructosephosphatesGlucuronic AcidHexuronic AcidsHistidine KinaseLigandsMannosephosphatesProtein KinasesTranscription FactorsAlginate BiosynthesisBacterial Signal TransductionBiosensorsHelix-swapped DimerHistidine KinasesProtein ConformationProtein StructureSensor DomainTwo-component System

Identifiers

PMID24573685
PMCPMC4007423
OpenAlexW2072798586

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.