Evidence map›Paper›PMID 24569999›Full record

ArticleThe Journal of biological chemistry2014

Roles of the protruding loop of factor B essential for the localization of lipoproteins (LolB) in the anchoring of bacterial triacylated proteins to the outer membrane.

Yumi Hayashi, Ryoji Tsurumizu, Jun Tsukahara, Kazuki Takeda, Shin-Ichiro Narita, Makiko Mori, Kunio Miki, Hajime Tokuda

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Identification and characterization of the functional LolB ortholog inbioRxiv : the preprint server for biology · 2026
    Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Article
  13. Structural and functional analysis of theFrontiers in microbiology · 2024
    Article
  14. Article
  15. Article
  16. Teasing apart the evolution of lipoprotein trafficking in gram-negative bacteria reveals a bifunctional LolA.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. LolA and LolB from the plant-pathogenFrontiers in microbiology · 2023
    Article
  18. Article
  19. Lipid trafficking across the Gram-negative cell envelope.The Journal of biological chemistry · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yumi HayashiInstitute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo 113-0032, Japan.
Ryoji TsurumizuInstitute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo 113-0032, Japan.
Jun TsukaharaInstitute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo 113-0032, Japan.
Kazuki TakedaDepartment of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Shin-Ichiro NaritaDepartment of Nutritional Sciences, University of Morioka, Takizawa 020-0694 Iwate, Japan.
Makiko MoriDepartment of Nutritional Sciences, University of Morioka, Takizawa 020-0694 Iwate, Japan.
Kunio MikiDepartment of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Hajime TokudaDepartment of Nutritional Sciences, University of Morioka, Takizawa 020-0694 Iwate, Japan. Electronic address: htokuda@morioka-u.ac.jp.
Morioka University · JPThe University of Tokyo · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Lol system comprising five Lol proteins, LolA through LolE, sorts Escherichia coli lipoproteins to outer membranes. The LolCDE complex, an ATP binding cassette transporter in inner membranes, releases outer membrane-specific lipoproteins in an ATP-dependent manner, causing formation of the LolA-lipoprotein complex in the periplasm. LolA transports lipoproteins through the periplasm to LolB on outer membranes. LolB is itself a lipoprotein anchored to outer membranes, although the membrane anchor is functionally dispensable. LolB then localizes lipoproteins to outer membranes through largely unknown mechanisms. The crystal structure of LolB is similar to that of LolA, and it possesses a hydrophobic cavity that accommodates acyl chains of lipoproteins. To elucidate the molecular function of LolB, a periplasmic version of LolB, mLolB, was mutagenized at various conserved residues. Despite the lack of acyl chains, most defective mutants were insoluble. However, a derivative with glutamate in place of leucine 68 was soluble and unable to localize lipoproteins to outer membranes. This leucine is present in a loop protruding from mLolB into an aqueous environment, and no analogous loop is present in LolA. Thus, leucine 68 was replaced with other residues. Replacement by acidic, but not hydrophobic, residues generated for the first time mLolB derivatives that can accept but cannot localize lipoproteins to outer membranes. Moreover, deletion of the leucine with neighboring residues impaired the lipoprotein receptor activity. Based on these observations, the roles of the protruding loop of LolB in the last step of lipoprotein sorting are discussed.

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsCarrier ProteinsCell MembraneCrystallography, X-RayEscherichia coliEscherichia coli ProteinsGenetic Complementation TestGlutamic AcidLeucineLipoproteinsMolecular ChaperonesMolecular Sequence DataMutagenesisMutationPeriplasmBacterial Outer Membrane ProteinsCarrier ProteinsEscherichia coli ProteinsGlutamic AcidLeucineLipoproteinsLolA protein, E coliLolB protein, E coliMolecular ChaperonesPeriplasmic Binding ProteinsBacterial LipoproteinCrystal StructureEscherichia coliLipoproteinLolBMembrane ProteinsPeriplasmProtein ExportProtein SortingProtein Structure

Identifiers

PMID24569999
PMCPMC4036174
OpenAlexW1967453813

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.