Evidence map›Paper›PMID 24569637›Full record

ArticleHeredity2014

Fine-mapping quantitative trait loci affecting murine external ear tissue regeneration in the LG/J by SM/J advanced intercross line.

J M Cheverud, H A Lawson, K Bouckaert, A V Kossenkov, L C Showe, L Cort, E P Blankenhorn, K Bedelbaeva, D Gourevitch, Y Zhang and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Heredity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. WNT3A-loaded exosomes enable cartilage repair.Journal of extracellular vesicles · 2021
    Article
  9. Article
  10. Article
  11. Effects of High-Fat Diet and Body Mass on Bone Morphology and Mechanical Properties in 1100 Advanced Intercross Mice.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2019
    Article
  12. Article
  13. Using Heterogeneous Stocks for Fine-Mapping Genetically Complex Traits.Methods in molecular biology (Clifton, N.J.) · 2019
    Review
  14. Review
  15. Review
  16. Review
  17. Chasing the recipe for a pro-regenerative immune system.Seminars in cell & developmental biology · 2017
    Review
  18. Genetic loci that regulate ectopic calcification in response to knee trauma in LG/J by SM/J advanced intercross mice.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2015
    Article
  19. From Immunity and Vaccines to Mammalian Regeneration.The Journal of infectious diseases · 2015
    Article
  20. Drug-induced regeneration in adult mice.Science translational medicine · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

J M CheverudDepartment of Anatomy and Neurobiology, Washington University School of Medicine, St Louis, MO, USA.
H A LawsonDepartment of Anatomy and Neurobiology, Washington University School of Medicine, St Louis, MO, USA.
K BouckaertDepartment of Anatomy and Neurobiology, Washington University School of Medicine, St Louis, MO, USA.
A V KossenkovMolecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, PA, USA.
L C ShoweMolecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, PA, USA.
L CortDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
E P BlankenhornDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, PA, USA.
K BedelbaevaMolecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, PA, USA.
D GourevitchMolecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, PA, USA.
Y ZhangMolecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, PA, USA.
E Heber-KatzMolecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, PA, USA.
The Wistar Institute · USWashington University in St. Louis · USDrexel University · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
Mapping Murine Regeneation GenesR01GM073226 · NIGMS · WISTAR INSTITUTE · PI HEBER-KATZ, ELLEN S. · 2006 to 2009
$1.7M
NCI NIH HHS P30 CA010815NHGRI NIH HHS HHSN268200782096CNIGMS NIH HHS GM073226NIGMS NIH HHS R01 GM073226
6 · The paper itself

Abstract

External ear hole closure in LG/J mice represents a model of regenerative response. It is accompanied by the formation of a blastema-like structure and the re-growth of multiple tissues, including cartilage. The ability to regenerate tissue is heritable. An F34 advanced intercross line of mice (Wustl:LG,SM-G34) was generated to identify genomic loci involved in ear hole closure over a 30-day healing period. We mapped 19 quantitative trait loci (QTL) for ear hole closure. Individual gene effects are relatively small (0.08 mm), and most loci have co-dominant effects with phenotypically intermediate heterozygotes. QTL support regions were limited to a median size of 2 Mb containing a median of 19 genes. Positional candidate genes were evaluated using differential transcript expression between LG/J and SM/J healing tissue, function analysis and bioinformatic analysis of single-nucleotide polymorphisms in and around positional candidate genes of interest. Analysis of the set of 34 positional candidate genes and those displaying expression differences revealed over-representation of genes involved in cell cycle regulation/DNA damage, cell migration and adhesion, developmentally related genes and metabolism. This indicates that the healing phenotype in LG/J mice involves multiple physiological mechanisms.

Indexed as

AnimalsChromosome MappingCrosses, GeneticEar, ExternalGenotypeHypoxia-Inducible Factor 1, alpha SubunitImmunohistochemistryKinesinsMiceMice, Inbred StrainsOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideQuantitative Trait LociRegenerationTranscriptomeWnt3A ProteinHif1a protein, mouseHypoxia-Inducible Factor 1, alpha SubunitKinesinsMKLP1 protein, mouseWnt3A ProteinWnt3a protein, mouse

Identifiers

PMID24569637
PMCPMC3998788
OpenAlexW2062394064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.