Evidence map›Paper›PMID 24567494›Full record

ArticleJournal of experimental botany2014

Sixteen cytosolic glutamine synthetase genes identified in the Brassica napus L. genome are differentially regulated depending on nitrogen regimes and leaf senescence.

Mathilde Orsel, Michaël Moison, Vanessa Clouet, Justine Thomas, Françoise Leprince, Anne-Sophie Canoy, Jérémy Just, Boulos Chalhoub, Céline Masclaux-Daubresse

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 49 citations in OpenAlex.

  1. Research Progress in High-Efficiency Utilization of Nitrogen in Rapeseed.International journal of molecular sciences · 2023
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Mathilde OrselINRA, UMR 1349 Institut de Génétique, Environnement et Protection des Plantes, INRA, Agrocampus Ouest, Université de Rennes 1, F-35653 Le Rheu, France INRA, UMR 1345 Institut de Recherche en Horticulture et Semences, F-49071 Beaucouzé, France Université d'Angers, UMR 1345 Institut de Recherche en Horticulture et Semences, SFR 4207 QUASAV, PRES L'UNAM, F-49045 Angers, France AgroCampus-Ouest, UMR 1345 Institut de Recherche en Horticulture et Semences, F-49045 Angers, France mathilde.orsel-baldwin@angers.inra.fr celine.masclaux@versailles.inra.fr.
Michaël MoisonUMR1318, INRA, Institut Jean-Pierre Bourgin, RD10, 78026 Versailles cedex, France AgroParisTech, Institut Jean-Pierre Bourgin, RD10, 78026 Versailles cedex, France.
Vanessa ClouetINRA, UMR 1349 Institut de Génétique, Environnement et Protection des Plantes, INRA, Agrocampus Ouest, Université de Rennes 1, F-35653 Le Rheu, France.
Justine ThomasINRA, UMR 1349 Institut de Génétique, Environnement et Protection des Plantes, INRA, Agrocampus Ouest, Université de Rennes 1, F-35653 Le Rheu, France.
Françoise LeprinceINRA, UMR 1349 Institut de Génétique, Environnement et Protection des Plantes, INRA, Agrocampus Ouest, Université de Rennes 1, F-35653 Le Rheu, France.
Anne-Sophie CanoyBiogemma, Groupe de Recherche Génomique Amont, F-63028 Clermont-Ferrand, France.
Jérémy JustINRA-CNRS, Unité de Recherche en Génomique Végétale, 2 rue Gaston Crémieux, CP 5708, 91057 Evry Cedex, France.
Boulos ChalhoubINRA-CNRS, Unité de Recherche en Génomique Végétale, 2 rue Gaston Crémieux, CP 5708, 91057 Evry Cedex, France.
Céline Masclaux-DaubresseUMR1318, INRA, Institut Jean-Pierre Bourgin, RD10, 78026 Versailles cedex, France AgroParisTech, Institut Jean-Pierre Bourgin, RD10, 78026 Versailles cedex, France mathilde.orsel-baldwin@angers.inra.fr celine.masclaux@versailles.inra.fr.
Université de Rennes · FRCentre National de la Recherche Scientifique · FRBiogemma (France) · FRInstitut Agro Rennes-Angers · FRInstitut Jean-Pierre Bourgin · FRInstitut National de la Recherche Agronomique · MA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A total of 16 BnaGLN1 genes coding for cytosolic glutamine synthetase isoforms (EC 6.3.1.2.) were found in the Brassica napus genome. The total number of BnaGLN1 genes, their phylogenetic relationships, and genetic locations are in agreement with the evolutionary history of Brassica species. Two BnaGLN1.1, two BnaGLN1.2, six BnaGLN1.3, four BnaGLN1.4, and two BnaGLN1.5 genes were found and named according to the standardized nomenclature for the Brassica genus. Gene expression showed conserved responses to nitrogen availability and leaf senescence among the Brassiceae tribe. The BnaGLN1.1 and BnaGLN1.4 families are overexpressed during leaf senescence and in response to nitrogen limitation. The BnaGLN1.2 family is up-regulated under high nitrogen regimes. The members of the BnaGLN1.3 family are not affected by nitrogen availability and are more expressed in stems than in leaves. Expression of the two BnaGLN1.5 genes is almost undetectable in vegetative tissues. Regulations arising from plant interactions with their environment (such as nitrogen resources), final architecture, and therefore sink-source relations in planta, seem to be globally conserved between Arabidopsis and B. napus. Similarities of the coding sequence (CDS) and protein sequences, expression profiles, response to nitrogen availability, and ageing suggest that the roles of the different GLN1 families have been conserved among the Brassiceae tribe. These findings are encouraging the transfer of knowledge from the Arabidopsis model plant to the B. napus crop plant. They are of special interest when considering the role of glutamine synthetase in crop yield and grain quality in maize and wheat.

Indexed as

Genes, PlantAmino Acid SequenceBrassica napusBrassica rapaChromosome MappingConserved SequenceCytosolDatabases, Nucleic AcidExpressed Sequence TagsGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGenetic LociGlutamate-Ammonia LigaseMolecular Sequence AnnotationMolecular Sequence DataNitratesGlutamate-Ammonia LigaseNitratesNitrogenPlant ProteinsRNA, MessengerAlloploidizationBrassica napusBrassica oleraceaBrassica rapanitrogen metabolismnitrogen remobilizationsenescence.

Identifiers

PMID24567494
PMCPMC4106436
OpenAlexW2171136118

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.