Evidence map›Paper›PMID 24567329›Full record

ArticleThe Journal of biological chemistry2014

Vfa1 binds to the N-terminal microtubule-interacting and trafficking (MIT) domain of Vps4 and stimulates its ATPase activity.

Cody J Vild, Zhaohui Xu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Cody J VildLife Sciences Institute and Department of Biological Chemistry, Medical School, University of Michigan, Ann Arbor, Michigan 48109.
Zhaohui XuLife Sciences Institute and Department of Biological Chemistry, Medical School, University of Michigan, Ann Arbor, Michigan 48109. Electronic address: zhaohui@umich.edu.
University of Michigan–Ann Arbor · US

Funding

Structural Basis of Membrane Scission: Regulation of the Vps4 ATPase ComplexR01GM095769 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI XU, ZHAOHUI · 2011 to 2014
$1.2M
NIGMS NIH HHS GM095769NIGMS NIH HHS R01 GM095769
6 · The paper itself

Abstract

The endosomal sorting complexes required for transport (ESCRT) are responsible for multivesicular body biogenesis, membrane abscission during cytokinesis, and retroviral budding. They function as transiently assembled molecular complexes on the membrane, and their disassembly requires the action of the AAA-ATPase Vps4. Vps4 is regulated by a multitude of ESCRT and ESCRT-related proteins. Binding of these proteins to Vps4 is often mediated via the microtubule-interacting and trafficking (MIT) domain of Vps4. Recently, a new Vps4-binding protein Vfa1 was identified in a yeast genetic screen, where overexpression of Vfa1 caused defects in vacuolar morphology. However, the function of Vfa1 and its role in vacuolar biology were largely unknown. Here, we provide the first detailed biochemical and biophysical study of Vps4-Vfa1 interaction. The MIT domain of Vps4 binds to the C-terminal 17 residues of Vfa1. This interaction is of high affinity and greatly stimulates the ATPase activity of Vps4. The crystal structure of the Vps4-Vfa1 complex shows that Vfa1 adopts a canonical MIT-interacting motif 2 structure that has been observed previously in other Vps4-ESCRT interactions. These findings suggest that Vfa1 is a novel positive regulator of Vps4 function.

Indexed as

Adenosine TriphosphatasesCalorimetryCarrier ProteinsCrystallography, X-RayEndosomal Sorting Complexes Required for TransportEndosomesGene Expression Regulation, EnzymologicGene Expression Regulation, FungalIntracellular Signaling Peptides and ProteinsMicrotubulesProtein BindingProtein Interaction MappingProtein Structure, SecondaryProtein Structure, TertiaryProtein TransportRosaniline DyesAdenosine TriphosphatasesCarrier ProteinsEndosomal Sorting Complexes Required for TransportIntracellular Signaling Peptides and Proteinsmalachite greenRosaniline DyesSaccharomyces cerevisiae ProteinsVfa1 protein, S cerevisiaeVPS4 protein, S cerevisiaeATPasesCrystal StructureEndosomesESCRTMembrane TraffickingMVBProtein-Protein InteractionsVfa1Vps4

Identifiers

PMID24567329
PMCPMC4036160
OpenAlexW1981777426

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.