Evidence map›Paper›PMID 24566687›Full record

ArticleMolecular biology reports2014

Gene structure and identification of minimal promoter of Pou2 expressed in spermatogonial cells of rohu carp, Labeo rohita.

Chinmayee Mohapatra, Swagat Kumar Patra, Rudra Prasanna Panda, Ramya Mohanta, Ashis Saha, Jatindra Nath Saha, Kanta Das Mahapatra, Pallipuram Jayasankar, Hirak Kumar Barman

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Article in Molecular biology reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Molecular characterization and expression patterns ofJournal of animal science and biotechnology · 2018
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4 · The record

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5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Chinmayee MohapatraFish Genetics and Biotechnology Division, Central Institute of Freshwater Aquaculture, Indian Council of Agricultural Research, Kausalyaganga, Bhubaneswar, 751002, Odisha, India.
Swagat Kumar Patra
Rudra Prasanna Panda
Ramya Mohanta
Ashis Saha
Jatindra Nath Saha
Kanta Das Mahapatra
Pallipuram Jayasankar
Hirak Kumar Barman
Central Institute of Freshwater Aquaculture · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mammalian Pou5f1 is a known transcriptional regulator involving maintenance of embryonic and spermatogonial stem cells. Little is known about teleost Pou2, an ortholog of mammalian Pou5f1. Evidences of discrepancy in expression pattern between fish species were documented. To better understand, we have cloned and characterized Pou2 gene of farmed rohu carp, Labeo rohita. It contained five exons with an open reading frame of 1419 bp long, translatable to 472 aa. A bipartite DNA binding domain termed POU domain, comprising of POU-specific and POU-homeo sub-domains, was identified. Rohu Pou2 is highly conserved with zebrafish counterpart, as evidenced by 92% overall sequence identity of deduced protein. The POU domain remained highly conserved (showing more than 90% identities) within fish species. Even though there is a divergence between Pou2 and Pou5f1, the common POU-specific domain remained conserved throughout eukaryotes indicating their possible involvements in common trans-activation pathway(s) between mammals and non-mammals. In support, we have provided evidence that Pou2 is indeed abundantly expressed in proliferating rohu spermatogonial cells and hence participates in stem cell maintenance. Its mRNA accumulation in the ovary supported about its maternal transmission with possible regulatory roles during embryogenesis. The 5'-flanking region (~2.7 kb) of rohu Pou2 was sequenced and computational analysis detected several putative regulatory elements. These elements have been conserved among fish species analysed. Luciferase assay identified a mammalian-type 'TATA-less promoter' capable of driving Pou2 gene transcription. These findings will help for future studies in elucidating participatory role of fish Pou2 in male germ cell development.

Indexed as

Promoter Regions, GeneticAdult Stem CellsAnimalsCarpsGene Expression Regulation, DevelopmentalOctamer Transcription Factor-3Zebrafish ProteinsOctamer Transcription Factor-3Pou5f3 protein, zebrafishZebrafish Proteins

Identifiers

PMID24566687
OpenAlexW2085813780

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.