ArticleBMC bioinformatics2014
iview: an interactive WebGL visualizer for protein-ligand complex.
Article in BMC bioinformatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
23 citing papers in PubMed.
- Autophagy3D: a comprehensive autophagy structure database.Database : the journal of biological databases and curation · 2024Article
- A Brave New World: Virtual Reality and Augmented Reality in Systems Biology.Frontiers in bioinformatics · 2022Article
- Determination of Chemical Composition, In Vitro and In Silico Evaluation of Essential Oil from Leaves ofMolecules (Basel, Switzerland) · 2021Article
- Pepblock Builder VR - An Open-Source Tool for Gaming-Based Bio-Edutainment in Interactive Protein Design.Frontiers in bioengineering and biotechnology · 2021Article
- GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns.BMC bioinformatics · 2020Article
- ProteinVR: Web-based molecular visualization in virtual reality.PLoS computational biology · 2020Article
- An immersive journey to the molecular structure of SARS-CoV-2: Virtual reality in COVID-19.Computational and structural biotechnology journal · 2020Review
- DockNmine, a Web Portal to Assemble and Analyse Virtual and Experimental Interaction Data.International journal of molecular sciences · 2019Article
- BioVR: a platform for virtual reality assisted biological data integration and visualization.BMC bioinformatics · 2019Article
- Frontiers in biomolecular mesh generation and molecular visualization systems.Visual computing for industry, biomedicine, and art · 2018Review
- Touching proteins with virtual bare hands : Visualizing protein-drug complexes and their dynamics in self-made virtual reality using gaming hardware.Journal of computer-aided molecular design · 2018Article
- Econazole nitrate inhibits PI3K activity and promotes apoptosis in lung cancer cells.Scientific reports · 2017Article
- Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey.Computer graphics forum : journal of the European Association for Computer Graphics · 2017Article
- Web3DMol: interactive protein structure visualization based on WebGL.Nucleic acids research · 2017Article
- Identification of Clinically Approved Drugs Indacaterol and Canagliflozin for Repurposing to Treat Epidermal Growth Factor Tyrosine Kinase Inhibitor-Resistant Lung Cancer.Frontiers in oncology · 2017Article
- Correcting the impact of docking pose generation error on binding affinity prediction.BMC bioinformatics · 2016Article
- USR-VS: a web server for large-scale prospective virtual screening using ultrafast shape recognition techniques.Nucleic acids research · 2016Article
- Web-based volume slicer for 3D electron-microscopy data from EMDB.Journal of structural biology · 2016Article
- KLIFS: a structural kinase-ligand interaction database.Nucleic acids research · 2016Article
- Adapalene inhibits the activity of cyclin-dependent kinase 2 in colorectal carcinoma.Molecular medicine reports · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundVisualization of protein-ligand complex plays an important role in elaborating protein-ligand interactions and aiding novel drug design. Most existing web visualizers either rely on slow software rendering, or lack virtual reality support. The vital feature of macromolecular surface construction is also unavailable.
resultsWe have developed iview, an easy-to-use interactive WebGL visualizer of protein-ligand complex. It exploits hardware acceleration rather than software rendering. It features three special effects in virtual reality settings, namely anaglyph, parallax barrier and oculus rift, resulting in visually appealing identification of intermolecular interactions. It supports four surface representations including Van der Waals surface, solvent excluded surface, solvent accessible surface and molecular surface. Moreover, based on the feature-rich version of iview, we have also developed a neat and tailor-made version specifically for our istar web platform for protein-ligand docking purpose. This demonstrates the excellent portability of iview.
conclusionsUsing innovative 3D techniques, we provide a user friendly visualizer that is not intended to compete with professional visualizers, but to enable easy accessibility and platform independence.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.