Evidence map›Paper›PMID 24564290›Full record

ArticleBMC genomics2013

Automatic B cell lymphoma detection using flow cytometry data.

Ming-Chih Shih, Shou-Hsuan Stephen Huang, Rachel Donohue, Chung-Che Chang, Youli Zu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 12 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ming-Chih Shih
Shou-Hsuan Stephen Huang
Rachel Donohue
Chung-Che Chang
Youli Zu
Houston Methodist · USUniversity of Houston · USUniversity of Central Florida · US

Funding

A bifunctional nanomedicine for both specific imaging and targeting therapy of anR01CA151955 · NCI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI ZU, YOULI · 2010 to 2014
$1.5M
RFA-CA -12-003 - Activatable One-Drop and One-Step Assay for Circulating Tumor CeR33CA173382 · NCI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI ZU, YOULI · 2012 to 2014
$1.1M
NCI NIH HHS R01CA151955NCI NIH HHS R33CA173382
6 · The paper itself

Abstract

backgroundFlow cytometry has been widely used for the diagnosis of various hematopoietic diseases. Although there have been advances in the number of biomarkers that can be analyzed simultaneously and technologies that enable fast performance, the diagnostic data are still interpreted by a manual gating strategy. The process is labor-intensive, time-consuming, and subject to human error.

resultsWe used 80 sets of flow cytometry data from 44 healthy donors, 21 patients with chronic lymphocytic leukemia (CLL), and 15 patients with follicular lymphoma (FL). Approximately 15% of data from each group were used to build the profiles. Our approach was able to successfully identify 36/37 healthy donor cases, 18/18 CLL cases, and 12/13 FL cases.

conclusionsThis proof-of-concept study demonstrated that an automated diagnosis of CLL and FL can be obtained by examining the cell capture rates of a test case using the computational method based on the multi-profile detection algorithm. The testing phase of our system is efficient and can facilitate diagnosis of B-lymphocyte neoplasms.

Indexed as

AlgorithmsAutomation, LaboratoryBiomarkers, TumorB-LymphocytesComputer SimulationFlow CytometryHumansLeukemia, Lymphocytic, Chronic, B-CellLymphoma, B-CellBiomarkers, Tumor

Identifiers

PMID24564290
PMCPMC3817807
OpenAlexW1966904377

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.