Evidence map›Paper›PMID 24563035›Full record

ArticleJournal of bacteriology2014

Escherichia coli isolate for studying colonization of the mouse intestine and its application to two-component signaling knockouts.

Melissa Lasaro, Zhi Liu, Rima Bishar, Kathryn Kelly, Sujay Chattopadhyay, Sandip Paul, Evgeni Sokurenko, Jun Zhu, Mark Goulian

Abstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Resident and EngraftingbioRxiv : the preprint server for biology · 2026
    Article
  6. Structural and functional insights into the Rcs phosphorelay.bioRxiv : the preprint server for biology · 2026
    Article
  7. Gut microbe-derivedProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. mSystems · 2024
    Article
  14. Complete genome sequence ofMicrobiology resource announcements · 2024
    Article
  15. Article
  16. Role of themBio · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Melissa LasaroDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Zhi Liu
Rima Bishar
Kathryn Kelly
Sujay Chattopadhyay
Sandip Paul
Evgeni Sokurenko
Jun Zhu
Mark Goulian

Funding

E. coli VariomeRC4AI092828 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC · 2010 to 2010
$4.0M
Regulation of Bacterial Two-Component Signaling by Small Membrane ProteinsR01GM080279 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GOULIAN, MARK D · 2007 to 2020
$3.7M
Analysis of gene regulation of Vibrio cholerae infectionR01AI072479 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ZHU, JUN · 2007 to 2011
$2.1M
Training in bacteriologyT32AI060516 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI GOULIAN, MARK D, ZHU, JUN · 2006 to 2015
$2.0M
Analysis of gene regulation of Vibrio cholerae during infectionR56AI072479 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ZHU, JUN · 2013 to 2013
$376k
NIAID NIH HHS AI072479NIAID NIH HHS R01 AI072479NIAID NIH HHS R56 AI072479NIAID NIH HHS RC4 AI092828NIAID NIH HHS T32 AI060516NIGMS NIH HHS GM080279NIGMS NIH HHS R01 GM080279
6 · The paper itself

Abstract

The biology of Escherichia coli in its primary niche, the animal intestinal tract, is remarkably unexplored. Studies with the streptomycin-treated mouse model have produced important insights into the metabolic requirements for Escherichia coli to colonize mice. However, we still know relatively little about the physiology of this bacterium growing in the complex environment of an intestine that is permissive for the growth of competing flora. We have developed a system for studying colonization using an E. coli strain, MP1, isolated from a mouse. MP1 is genetically tractable and does not require continuous antibiotic treatment for stable colonization. As an application of this system, we separately knocked out each two-component system response regulator in MP1 and performed competitions against the wild-type strain. We found that only three response regulators, ArcA, CpxR, and RcsB, produce strong colonization defects, suggesting that in addition to anaerobiosis, adaptation to cell envelope stress is a critical requirement for E. coli colonization of the mouse intestine. We also show that the response regulator OmpR, which had previously been hypothesized to be important for adaptation between in vivo and ex vivo environments, is not required for MP1 colonization due to the presence of a third major porin.

Indexed as

AnimalsBacterial Outer Membrane ProteinsBacterial ProteinsEscherichia coliEscherichia coli ProteinsGene Knockout TechniquesIntestinal MucosaMiceRepressor ProteinsTranscription FactorsarcA protein, E coliBacterial Outer Membrane ProteinsBacterial ProteinsCpxR protein, BacteriaEscherichia coli ProteinsRcsB protein, E coliRepressor ProteinsTranscription Factors

Identifiers

PMID24563035
PMCPMC3993324

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.