Evidence map›Paper›PMID 24562917›Full record

ArticlePlant & cell physiology2014

Auxin overproduction in shoots cannot rescue auxin deficiencies in Arabidopsis roots.

Qingguo Chen, Xinhua Dai, Henrique De-Paoli, Youfa Cheng, Yumiko Takebayashi, Hiroyuki Kasahara, Yuji Kamiya, Yunde Zhao

Abstract read
In one paragraph

Article in Plant & cell physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed.

  1. Article
  2. Article
  3. Towards an integrated molecular understanding of plant hormones.Journal of integrative plant biology · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Endogenous cAMP elevation inPlant signaling & behavior · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Qingguo ChenSection of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA.
Xinhua DaiSection of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA.
Henrique De-PaoliSection of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA.
Youfa ChengSection of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA.
Yumiko TakebayashiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045 Japan.
Hiroyuki KasaharaRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045 Japan.
Yuji KamiyaRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045 Japan.
Yunde ZhaoSection of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA yundezhao@ucsd.edu.

Funding

Auxin Biosynthesis and Signaling Mechanisms.R01GM068631 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHAO, YUNDE · 2003 to 2012
$2.9M
NIGMS NIH HHS R01GM68631
6 · The paper itself

Abstract

Auxin plays an essential role in root development. It has been a long-held dogma that auxin required for root development is mainly transported from shoots into roots by polarly localized auxin transporters. However, it is known that auxin is also synthesized in roots. Here we demonstrate that a group of YUCCA (YUC) genes, which encode the rate-limiting enzymes for auxin biosynthesis, plays an essential role in Arabidopsis root development. Five YUC genes (YUC3, YUC5, YUC7, YUC8 and YUC9) display distinct expression patterns during root development. Simultaneous inactivation of the five YUC genes (yucQ mutants) leads to the development of very short and agravitropic primary roots. The yucQ phenotypes are rescued by either adding 5 nM of the natural auxin, IAA, in the growth media or by expressing a YUC gene in the roots of yucQ. Interestingly, overexpression of a YUC gene in shoots in yucQ causes the characteristic auxin overproduction phenotypes in shoots; however, the root defects of yucQ are not rescued. Our data demonstrate that localized auxin biosynthesis in roots is required for normal root development and that auxin transported from shoots is not sufficient for supporting root elongation and root gravitropic responses.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsBiological TransportGravitropismIndoleacetic AcidsMutationOrgan SpecificityOxygenasesPhenotypePlant Growth RegulatorsPlant RootsPlant ShootsArabidopsis ProteinsIndoleacetic AcidsOxygenasesPlant Growth RegulatorsYUC protein, ArabidopsisAuxinBiosynthesisHormoneRoot developmentTransport

Identifiers

PMID24562917
PMCPMC4051135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.