Evidence map›Paper›PMID 24562912›Full record

ArticleJournal of molecular modeling2014

Virtual screening of potential inhibitors from TCM for the CPSF30 binding site on the NS1A protein of influenza A virus.

Haixin Ai, Li Zhang, Alan K Chang, Hongyun Wei, Yuchen Che, Hongsheng Liu

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of molecular modeling, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Review
  3. Virtual Screening of Novel 24-Dehydroxysterol Reductase (Molecules (Basel, Switzerland) · 2023
    Article
  4. Review
  5. Development and Effects of Influenza Antiviral Drugs.Molecules (Basel, Switzerland) · 2021
    Review
  6. Review
  7. Article
  8. Article
  9. Recent Developments and Applications of the MMPBSA Method.Frontiers in molecular biosciences · 2017
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Haixin AiResearch Center for Computer Simulating and Information Processing of Bio-macromolecules of Shenyang, School of Life Science, Liaoning University, Shenyang, 110036, China.
Li Zhang
Alan K Chang
Hongyun Wei
Yuchen Che
Hongsheng Liu
Liaoning University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inhibition of CPSF30 function by the effector domain of influenza A virus of non-structural protein 1 (NS1A) protein plays a critical role in the suppression of host key antiviral response. The CPSF30-binding site of NS1A appears to be a very attractive target for the development of new drugs against influenza A virus. In this study, structure-based molecular docking was utilized to screen more than 30,000 compounds from a Traditional Chinese Medicine (TCM) database. Four drug-like compounds were selected as potential inhibitors for the CPSF30-binding site of NS1A. Docking conformation analysis results showed that these potential inhibitors could bind to the CPSF30-binding site with strong hydrophobic interactions and weak hydrogen bonds. Molecular dynamics simulations and MM-PBSA calculations suggested that two of the inhibitors, compounds 32056 and 31674, could stably bind to the CPSF30-binding site with high binding free energy. These two compounds could be modified to achieve higher binding affinity, so that they may be used as potential leads in the development of new anti-influenza drugs.

Indexed as

Medicine, Chinese TraditionalAlgorithmsAntiviral AgentsBinding SitesCleavage And Polyadenylation Specificity FactorDatabases, FactualHost-Pathogen InteractionsHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanKineticsMolecular Docking SimulationMolecular Dynamics SimulationMolecular StructureProtein BindingProtein Structure, TertiaryAntiviral AgentsCleavage And Polyadenylation Specificity FactorINS1 protein, influenza virusViral Nonstructural Proteins

Identifiers

PMID24562912
OpenAlexW1981182283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.