Evidence map›Paper›PMID 24560144›Full record

ReviewProgress in molecular biology and translational science2014

Multiscale modeling of cell shape from the actin cytoskeleton.

Padmini Rangamani, Granville Yuguang Xiong, Ravi Iyengar

Abstract readReview
In one paragraph

Review in Progress in molecular biology and translational science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Microtubules: Evolving roles and critical cellular interactions.Experimental biology and medicine (Maywood, N.J.) · 2019
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Padmini RangamaniDepartment of Molecular and Cell Biology, University of California, Berkeley, California, USA; Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, USA.
Granville Yuguang XiongDepartment of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, USA.
Ravi IyengarDepartment of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, USA; Systems Biology Center New York, Mount Sinai School of Medicine, New York, USA.
Icahn School of Medicine at Mount Sinai · US

Funding

System Biology Center in New YorkP50GM071558 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ZAPH, SUSANA NEVES · 2007 to 2017
$22.8M
Spatial Models of Cell Regulatory NetworksR01GM072853 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI HONE, JAMES C, IYENGAR, SRINIVAS RAVI V · 2005 to 2019
$6.1M
NIGMS NIH HHS GM-071558NIGMS NIH HHS GM 072853NIGMS NIH HHS P50 GM071558NIGMS NIH HHS R01 GM072853
6 · The paper itself

Abstract

The actin cytoskeleton is a dynamic structure that constantly undergoes complex reorganization events during many cellular processes. Mathematical models and simulations are powerful tools that can provide insight into the physical mechanisms underlying these processes and make predictions that can be experimentally tested. Representation of the interactions of the actin filaments with the plasma membrane and the movement of the plasma membrane for computation remains a challenge. Here, we provide an overview of the different modeling approaches used to study cytoskeletal dynamics and highlight the differential geometry approach that we have used to implement the interactions between the plasma membrane and the cytoskeleton. Using cell spreading as an example, we demonstrate how this approach is able to successfully capture in simulations, experimentally observed behavior. We provide a perspective on how the differential geometry approach can be used for other biological processes.

Indexed as

Cell ShapeModels, BiologicalActin CytoskeletonAnimalsCell MovementComputer SimulationHumansSignal TransductionActin cytoskeletonBrownian ratchetCell spreadingModelingMotility

Identifiers

PMID24560144
PMCPMC4966540
OpenAlexW2411069443

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.