Evidence map›Paper›PMID 24559990›Full record

ArticleBiophysical journal2014

CENP-A arrays are more condensed than canonical arrays at low ionic strength.

Christian P Geiss, Dimitra Keramisanou, Nikolina Sekulic, Margot P Scheffer, Ben E Black, Achilleas S Frangakis

Abstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. The molecular basis for centromere identity and function.Nature reviews. Molecular cell biology · 2016
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Christian P GeissBuchmann Institute for Molecular Life Sciences, Frankfurt, Germany.
Dimitra KeramisanouBuchmann Institute for Molecular Life Sciences, Frankfurt, Germany.
Nikolina SekulicDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Margot P SchefferBuchmann Institute for Molecular Life Sciences, Frankfurt, Germany.
Ben E BlackDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Achilleas S FrangakisBuchmann Institute for Molecular Life Sciences, Frankfurt, Germany. Electronic address: achilleas.frangakis@biophysik.org.

Funding

Centromere Identity and FunctionR01GM082989 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BLACK, BEN E. · 2008 to 2018
$3.6M
NIGMS NIH HHS GM082989NIGMS NIH HHS R01 GM082989
6 · The paper itself

Abstract

The centromeric histone H3 variant centromeric protein A (CENP-A), whose sequence is the least conserved among all histone variants, is responsible for specifying the location of the centromere. Here, we present a comprehensive study of CENP-A nucleosome arrays by cryo-electron tomography. We see that CENP-A arrays have different biophysical properties than canonical ones under low ionic conditions, as they are more condensed with a 20% smaller average nearest-neighbor distance and a 30% higher nucleosome density. We find that CENP-A nucleosomes have a predominantly crossed DNA entry/exit site that is narrowed on average by 8°, and they have a propensity to stack face to face. We therefore propose that CENP-A induces geometric constraints at the nucleosome DNA entry/exit site to bring neighboring nucleosomes into close proximity. This specific property of CENP-A may be responsible for generating a fundamental process that contributes to increased chromatin fiber compaction that is propagated under physiological conditions to form centromeric chromatin.

Indexed as

AnimalsAutoantigensCentromere Protein AChromosomal Proteins, Non-HistoneDNAHumansNucleosomesOsmolar ConcentrationProtein ConformationXenopus laevisAutoantigensCENPA protein, humanCentromere Protein AChromosomal Proteins, Non-HistoneDNANucleosomes

Identifiers

PMID24559990
PMCPMC3944588

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.