Evidence map›Paper›PMID 24558376›Full record

ArticlePloS one2014

A novel pathway links oxidative stress to loss of insulin growth factor-2 (IGF2) imprinting through NF-κB activation.

Bing Yang, Jennifer Wagner, Nathan Damaschke, Tianyu Yao, Shelly M Wuerzberger-Davis, Moon-Hee Lee, John Svaren, Shigeki Miyamoto, David F Jarrard

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  6. Review
  7. Article
  8. Article
  9. Review
  10. Associations betweenBioscience reports · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Oxidative stress and prostatic diseases.Molecular and clinical oncology · 2017
    Article
  16. Review
  17. Article
  18. Article
  19. Role of CTCF in DNA damage response.Mutation research. Reviews in mutation research
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Bing YangDepartment of Urology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, United States of America.
Jennifer WagnerDepartment of Urology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, United States of America.
Nathan DamaschkeDepartment of Urology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, United States of America.
Tianyu YaoDepartment of Urology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, United States of America.
Shelly M Wuerzberger-DavisDepartment of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin, Madison, Wisconsin, United States of America.
Moon-Hee LeeDepartment of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin, Madison, Wisconsin, United States of America.
John SvarenComparative Biosciences, University of Wisconsin, Madison, Wisconsin, United States of America.
Shigeki MiyamotoDepartment of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin, Madison, Wisconsin, United States of America ; University of Wisconsin Carbone Comprehensive Cancer Center, Madison, Wisconsin, United States of America.
David F JarrardDepartment of Urology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, United States of America ; University of Wisconsin Carbone Comprehensive Cancer Center, Madison, Wisconsin, United States of America ; Environmental and Molecular Toxicology, University of Wisconsin, Madison, Wisconsin, United States of America.
University of Wisconsin–Madison · USUniversity of Wisconsin Carbone Cancer Center · US

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI AMY TRENTHAM-DIETZ · 1985 to 2026
$142.6M
WISCONSIN CENTER ON MENTAL RETARDATION: CORE SUPPORTP30HD003352 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI MESSING, ALBEE · 1985 to 2015
$25.2M
Training in Cancer Biology Training GrantT32CA009135 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI SUGDEN, WILLIAM M. · 1985 to 2024
$10.4M
MODULATION OF IGF-II IMPRINTING IN THE AGING PROSTATER01CA097131 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI JARRARD, DAVID F. · 2002 to 2013
$2.5M
NCI NIH HHS 2R01CA097131NCI NIH HHS P30 CA014520NCI NIH HHS R01 CA097131NCI NIH HHS T32 CA009135NICHD NIH HHS P30 HD003352
6 · The paper itself

Abstract

Genomic imprinting is the allele-specific expression of a gene based on parental origin. Loss of imprinting(LOI) of Insulin-like Growth Factor 2 (IGF2) during aging is important in tumorigenesis, yet the regulatory mechanisms driving this event are largely unknown. In this study oxidative stress, measured by increased NF-κB activity, induces LOI in both cancerous and noncancerous human prostate cells. Decreased expression of the enhancer-blocking element CCCTC-binding factor(CTCF) results in reduced binding of CTCF to the H19-ICR (imprint control region), a major factor in the allelic silencing of IGF2. This ICR then develops increased DNA methylation. Assays identify a recruitment of the canonical pathway proteins NF-κB p65 and p50 to the CTCF promoter associated with the co-repressor HDAC1 explaining gene repression. An IκBα super-repressor blocks oxidative stress-induced activation of NF-κB and IGF2 imprinting is maintained. In vivo experiments using IκBα mutant mice with continuous NF-κB activation demonstrate increased IGF2 LOI further confirming a central role for canonical NF-κB signaling. We conclude CTCF plays a central role in mediating the effects of NF-κB activation that result in altered imprinting both in vitro and in vivo. This novel finding connects inflammation found in aging prostate tissues with the altered epigenetic landscape.

Indexed as

Gene Expression Regulation, NeoplasticOxidative StressAllelesAnimalsCCCTC-Binding FactorCell Line, TumorDNA MethylationEpigenesis, GeneticEpigenomicsGene SilencingGenomic ImprintingHumansInflammationInsulin-Like Growth Factor IIMaleMiceCCCTC-Binding FactorCTCF protein, humanCtcf protein, mouseIGF2 protein, humanInsulin-Like Growth Factor IINF-kappa BRepressor Proteins

Identifiers

PMID24558376
PMCPMC3928145
OpenAlexW1985978204

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.