Evidence map›Paper›PMID 24558093›Full record

ArticleStroke2014

Nascent proteomes in peripheral blood mononuclear cells as a novel source for biomarker discovery in human stroke.

Fang Bian, Roger P Simon, Yun Li, Larry David, Jolita Wainwright, Casey L Hall, Michael Frankel, An Zhou

Open access · bronzeAbstract readControlled Clinical Trial
In one paragraph

Article in Stroke, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Distinct plasma proteomic changes in male and female African American stroke patients.International journal of physiology, pathophysiology and pharmacology · 2019
    Article
  6. Review
  7. Blood transcriptome changes after stroke in an African American population.Annals of clinical and translational neurology · 2016
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Fang BianFrom the Department of Neurobiology (F.B., R.P.S., Y.L., A.Z.), and Clinical Research Center (J.W.), Morehouse School of Medicine, Atlanta, GA; Marcus Stroke and Neuroscience Center, Grady Memorial Hospital, Atlanta, GA (R.P.S., M.F.); Department of Biochemistry, Oregon Health Science University, Portland (L.D.); and Department of Neurology, Emory University, Atlanta, GA (C.L.H., M.F.).
Roger P Simon
Yun Li
Larry David
Jolita Wainwright
Casey L Hall
Michael Frankel
An Zhou
Grady Memorial Hospital · USOregon Health & Science University · US

Funding

Morehouse School of Medicine Center of Excellence Research Endowment ProgramS21MD000101 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI MONTGOMERY-RICE, VALERIE C. · 2001 to 2015
$74.3M
TRANSCRIPTION FACTORS AND PROSTATE CANCERG12RR003034 · NCRR · MOREHOUSE SCHOOL OF MEDICINE · PI ZHAO, XUEYING · 1986 to 2011
$32.4M
Research Desogn and Biostatistics CoreU54MD007588 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI KLEMENT, BRENDA · 2012 to 2018
$24.8M
TRANSPLANTATION OF EXOSOMES FROM HYPOXIA-PRECONDITIONED ADIPOSE-DERIVED STEM CELLS PROMOTES ANGIOGENESIS IN ISCHEMIC HEARTG12MD007602 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI BOND, VINCENT C · 2012 to 2017
$18.4M
Training and knowledge transferU54NS060659 · NINDS · MOREHOUSE SCHOOL OF MEDICINE · PI BENVENISTE, MORRIS J. · 2008 to 2012
$6.9M
MENTORING EMORY NEUROCLINICIAN TRAINEES IN RESEARCH (MENTIR)R25NS065739 · NINDS · EMORY UNIVERSITY · PI OYESIKU, NELSON M, SMITH, YOLAND · 2009 to 2018
$708k
Quantitative Proteomic Reconfiguration in Induction of Neuroprotection against StR21NS075538 · NINDS · MOREHOUSE SCHOOL OF MEDICINE · PI ZHOU, AN · 2011 to 2012
$389k
NCRR NIH HHS C06 RR-07571NCRR NIH HHS G12 RR003034NIMHD NIH HHS 8U54MD007588-04NIMHD NIH HHS G12 MD007602NIMHD NIH HHS S21 MD000101NIMHD NIH HHS U54 MD007588NINDS NIH HHS 1R21NS075538NINDS NIH HHS R21 NS075538NINDS NIH HHS R25 NS065739NINDS NIH HHS R25NS065739NINDS NIH HHS U54 NS060659
6 · The paper itself

Abstract

background and purposeThe proteome of newly synthesized proteins (nascent proteome) in peripheral blood mononuclear cells (PBMCs) can be a novel source of stroke biomarkers. Changes in the PBMC nascent proteome after stroke reflect the dynamic response-in-action not detectable in the total proteome (all existing proteins) in blood. Here, we test the application of nascent proteomics as a novel approach for stroke biomarker discovery.

methodsThe PBMC nascent proteome in human blood was determined by metabolic labeling of fresh PBMC cultures with azidohomoalanine (an azide-containing methionine surrogate), followed by mass spectrometry detection and quantification of azidohomoalanine-labeled proteins. The PBMC nascent and total proteomes were compared between patients with stroke and matched controls.

resultsBoth PBMC nascent and total proteomes showed differences between stroke patients and controls. Results of hierarchical clustering analysis of proteomic data revealed greater changes in the nascent than in the total PBMC proteomes, supporting the usefulness of the PBMC nascent proteome as a novel source of stroke biomarkers.

conclusionsNascent proteomes in PBMC can be a novel source for biomarker discovery in human stroke.

Indexed as

AlanineBiomarkersCells, CulturedCluster AnalysisFemaleHumansLeukocytes, MononuclearMaleMass SpectrometryPilot ProjectsProteomeProteomicsStaining and LabelingStrokeAlanineazidohomoalanineBiomarkersProteomebiomarkersleukocytesproteomicsstroke

Identifiers

PMID24558093
PMCPMC3992918
OpenAlexW2002808246

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.