Evidence map›Paper›PMID 24555739›Full record

ArticleBMC research notes2014

Molecular characterization and PCR-based replicon typing of multidrug resistant Shigella sonnei isolates from an outbreak in Thimphu, Bhutan.

Sirigade Ruekit, Sonam Wangchuk, Tshering Dorji, Kinzang Pem Tshering, Piyarat Pootong, Panida Nobthai, Oralak Serichantalergs, Kamonporn Poramathikul, Ladaporn Bodhidatta, Carl Jeffries Mason

Abstract read
In one paragraph

Article in BMC research notes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genomic Characterization of Carbapenemase-ProducingAntibiotics (Basel, Switzerland) · 2024
    Article
  6. The evolutionary history ofMicrobial genomics · 2021
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Salmonella, Shigella, and yersinia.Clinics in laboratory medicine · 2015
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sirigade RuekitDepartment of Enteric Diseases, Armed Forces Research Institute of Medical Sciences (AFRIMS), Bangkok, Thailand. sirigader@afrims.org.
Sonam Wangchuk
Tshering Dorji
Kinzang Pem Tshering
Piyarat Pootong
Panida Nobthai
Oralak Serichantalergs
Kamonporn Poramathikul
Ladaporn Bodhidatta
Carl Jeffries Mason

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundShigella species are an important cause of diarrhea in developing countries. These bacteria normally acquire their antibiotic resistance via several different mobile genetic elements including plasmids, transposons, and integrons involving gene cassettes. During a diarrhea surveillance study in Thimphu, Bhutan in June and July, 2011, Shigella sonnei were isolated more frequently than expected. This study describes the antibiotic resistance of these S. sonnei isolates.

methodsA total of 29 S. sonnei isolates from Thimphu, Bhutan was characterized for antimicrobial susceptibility by disc diffusion assay and minimum inhibitory concentration (MIC) assay. All isolates were tested by pulsed-field gel electrophoresis (PFGE) with restriction enzyme XbaI and were tested for plasmid. The plasmid patterns and the PFGE patterns were analyzed by Bionumerics software. DNA sequencing was performed on amplified products for gyraseA gene and class 1 and class 2 integrons. S. sonnei isolates were classified for incompatibility of plasmids by PCR-based replicon typing (PBRT).

resultsThese S. sonnei were resistant to multiple drugs like ciprofloxacin, nalidixic acid, trimethoprim-sulfamethoxazole, streptomycin, and tetracycline but susceptible to azithromycin. All isolates had class 2 integrons dfrA1, sat1 and aadA1 genes. Two point mutations in Gyrase A subunit at position Ser83Leu and Asp87Gly were detected in these quinolone resistant isolates. The plasmid and PFGE patterns of S. sonnei isolates suggested a clonal relationship of the isolates. All isolates carried common ColE plasmid. ColE plasmid co-resided with B/O plasmid (nine isolates) or I1 plasmid (one isolate).

conclusionsThe characteristics of 29 S. sonnei isolates from Thimphu, Bhutan in June and July, 2011 are identical in PFGE, plasmid and resistance pattern. This study suggests that these recent S. sonnei isolates are clonally related and multidrug-resistant.

Indexed as

Anti-Bacterial AgentsBhutanChild, PreschoolDeoxyribonucleases, Type II Site-SpecificDisease OutbreaksDNA, BacterialDrug Resistance, Multiple, BacterialDysentery, BacillaryElectrophoresis, Gel, Pulsed-FieldHost-Pathogen InteractionsHumansInfantIntegronsMicrobial Sensitivity TestsMolecular TypingPlasmidsAnti-Bacterial AgentsDeoxyribonucleases, Type II Site-SpecificDNA, Bacterialendodeoxyribonuclease XBAI

Identifiers

PMID24555739
PMCPMC3936901

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.